KEGG   PATHWAY: daz03008
Entry
daz03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Drosophila arizonae
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
daz03008  Ribosome biogenesis in eukaryotes
daz03008

Organism
Drosophila arizonae [GN:daz]
Gene
108619162  casein kinase II subunit beta isoform X1 [KO:K03115]
108616123  casein kinase II subunit beta' [KO:K03115]
108615091  suppressor-of-stellate-like protein [KO:K03115]
108621621  casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
108610686  nucleolar protein 6 [KO:K14544]
108609711  ribosomal RNA-processing protein 7 homolog A [KO:K14545]
108615328  WD repeat-containing protein 43 [KO:K14546]
108614330  U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
108619245  U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
108611756  HEAT repeat-containing protein 1 homolog [KO:K14550]
108611192  WD repeat-containing protein 75 [KO:K14552]
108616659  U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
108621290  WD repeat-containing protein 36 [KO:K14554]
108615180  transducin beta-like protein 3 [KO:K14555]
108619468  U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
108615490  periodic tryptophan protein 2 homolog [KO:K14558]
108611130  U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
108620432  brix domain-containing protein ZK795.3 [KO:K14561]
108616989  rRNA 2'-O-methyltransferase fibrillarin [KO:K14563] [EC:2.1.1.-]
108618808  nucleolar protein 56 [KO:K14564]
108610665  nucleolar protein 58 [KO:K14565]
108611567  NHP2-like protein 1 homolog [KO:K12845]
108616918  H/ACA ribonucleoprotein complex subunit 4 [KO:K11131] [EC:5.4.99.-]
108612897  H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
108620576  probable H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
108616260  H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
108611292  rRNA-processing protein FCF1 homolog [KO:K14566]
108613937  U3 small nucleolar RNA-associated protein 14 homolog A [KO:K14567]
108617358  ribonuclease 3 [KO:K03685] [EC:3.1.26.3]
108619872  ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
108613567  ribosome biogenesis protein BMS1 homolog [KO:K14569]
108619946  RNA cytidine acetyltransferase [KO:K14521] [EC:2.3.1.-]
108619832  probable RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
108618811  ribonucleases P/MRP protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
108613472  ribonuclease P protein subunit p29 [KO:K03538] [EC:3.1.26.5]
108613097  uncharacterized protein LOC108613097 [KO:K03537] [EC:3.1.26.5]
108616243  ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
108619106  ribonuclease P protein subunit p20 [KO:K14527] [EC:3.1.26.5]
108609754  ribonuclease P protein subunit p30 [KO:K03539] [EC:3.1.26.5]
108620758  RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
108620362  uncharacterized protein LOC108620362 [KO:K14570] [EC:3.1.-.-]
108614396  uncharacterized protein LOC108614396 [KO:K14570] [EC:3.1.-.-]
108618031  5'-3' exoribonuclease 1 [KO:K12618] [EC:3.1.13.-]
108617311  nucleolar GTP-binding protein 1 [KO:K06943]
108616783  nucleolar GTP-binding protein 2 [KO:K14537]
108620832  guanine nucleotide-binding protein-like 3 homolog [KO:K14538]
108613576  nuclear valosin-containing protein-like isoform X1 [KO:K14571]
108615875  midasin [KO:K14572]
108616547  RNA-binding protein 28 [KO:K14573]
108618977  RNA-binding protein NOB1 isoform X1 [KO:K11883]
108612123  GTP-binding nuclear protein GSP1/Ran-like [KO:K07936]
108609559  GTP-binding nuclear protein GSP1/Ran-like [KO:K07936]
108612927  GTP-binding nuclear protein Ran-like [KO:K07936]
108619726  GTP-binding nuclear protein Ran [KO:K07936]
108610937  exportin-1 [KO:K14290]
108618704  60S ribosomal export protein NMD3 [KO:K07562]
108618377  nuclear RNA export factor 1 isoform X1 [KO:K14284]
108608757  nuclear RNA export factor 1 [KO:K14284]
108618608  NTF2-related export protein [KO:K14285]
108616136  eukaryotic translation initiation factor 6 [KO:K03264]
108614169  ribosome maturation protein SBDS [KO:K14574]
108612731  elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
108618814  large subunit GTPase 1 homolog isoform X1 [KO:K14539] [EC:3.6.1.-]
108610381  spermatogenesis-associated protein 5 [KO:K14575]
108615252  adenylate kinase isoenzyme 6 homolog [KO:K18532] [EC:2.7.4.3]
108613625  serine/threonine-protein kinase RIO1 [KO:K07178] [EC:2.7.11.1]
108608679  serine/threonine-protein kinase RIO2 [KO:K07179] [EC:2.7.11.1]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
daz03010  Ribosome
KO pathway
ko03008   
LinkDB

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