KEGG   PATHWAY: dej00020
Entry
dej00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudodesulfovibrio indicus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dej00020  Citrate cycle (TCA cycle)
dej00020

Module
dej_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dej00020]
dej_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dej00020]
Other DBs
GO: 0006099
Organism
Pseudodesulfovibrio indicus [GN:dej]
Gene
AWY79_08150  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AWY79_04155  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AWY79_15450  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AWY79_14200  2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
AWY79_01880  pyruvate ferredoxin oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AWY79_02785  2-ketoisovalerate ferredoxin oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AWY79_11515  pyruvate ferredoxin oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AWY79_13780  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AWY79_01885  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AWY79_02780  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AWY79_11520  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AWY79_13775  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AWY79_01890  pyruvate ferredoxin oxidoreductase [KO:K00177] [EC:1.2.7.3]
AWY79_02775  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
AWY79_13770  pyruvate ferredoxin oxidoreductase [KO:K00177] [EC:1.2.7.3]
AWY79_01895  2-oxoacid:acceptor oxidoreductase [KO:K00176] [EC:1.2.7.3]
AWY79_02790  (Fe-S)-binding protein [KO:K00176] [EC:1.2.7.3]
AWY79_13785  4Fe-4S ferredoxin [KO:K00176] [EC:1.2.7.3]
AWY79_12300  succinyl-CoA synthetase subunit beta [KO:K01902] [EC:6.2.1.5]
AWY79_17525  fumarate reductase [KO:K00233] [EC:1.3.5.1 7.1.1.12]
AWY79_10165  fumarate reductase [KO:K00233] [EC:1.3.5.1 7.1.1.12]
AWY79_10170  frdB; fumarate reductase [KO:K25995] [EC:1.3.5.1 7.1.1.12]
AWY79_17530  frdB; fumarate reductase [KO:K25995] [EC:1.3.5.1 7.1.1.12]
AWY79_17520  fumarate reductase [KO:K25996]
AWY79_10160  fumarate reductase [KO:K25996]
AWY79_10175  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
AWY79_17535  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
AWY79_10180  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
AWY79_17540  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
AWY79_03335  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AWY79_12275  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
AWY79_11540  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
AWY79_16190  dehydrogenase [KO:K00627] [EC:2.3.1.12]
AWY79_02100  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
AWY79_02095  2-ketoisovalerate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
AWY79_02110  pyruvate ferredoxin oxidoreductase [KO:K00172] [EC:1.2.7.1]
AWY79_02105  2-oxoacid:acceptor oxidoreductase [KO:K00171] [EC:1.2.7.1]
AWY79_09175  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
AWY79_11200  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
AWY79_17600  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dej00010  Glycolysis / Gluconeogenesis
dej00053  Ascorbate and aldarate metabolism
dej00061  Fatty acid biosynthesis
dej00071  Fatty acid degradation
dej00190  Oxidative phosphorylation
dej00220  Arginine biosynthesis
dej00250  Alanine, aspartate and glutamate metabolism
dej00280  Valine, leucine and isoleucine degradation
dej00350  Tyrosine metabolism
dej00470  D-Amino acid metabolism
dej00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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