KEGG   PATHWAY: dfd00020
Entry
dfd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Desulfurococcus amylolyticus DSM 16532
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dfd00020  Citrate cycle (TCA cycle)
dfd00020

Module
dfd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dfd00020]
dfd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dfd00020]
Other DBs
GO: 0006099
Organism
Desulfurococcus amylolyticus DSM 16532 [GN:dfd]
Gene
Desfe_0667  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Desfe_0499  2-oxoglutarate ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Desfe_0475  2-oxoglutarate synthase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Desfe_0498  2-oxoglutarate ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Desfe_0474  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Desfe_0497  Pyruvate/ketoisovalerate oxidoreductase, catalytic domain protein [KO:K00177] [EC:1.2.7.3]
Desfe_0500  2-oxoglutarate ferredoxin oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
Desfe_1155  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Desfe_1156  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Desfe_0880  Carbamoyl-phosphate synthase L chain ATP-binding protein [KO:K01959] [EC:6.4.1.1]
Desfe_0591  Conserved carboxylase region [KO:K01960] [EC:6.4.1.1]
Desfe_0003  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Desfe_0503  pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
Desfe_1298  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Desfe_1299  thiamine pyrophosphate TPP-binding domain-containing protein [KO:K00170] [EC:1.2.7.1]
Desfe_0502  thiamine pyrophosphate TPP-binding domain-containing protein [KO:K00170] [EC:1.2.7.1]
Desfe_0505  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Desfe_1296  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Desfe_0504  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Desfe_1297  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dfd00010  Glycolysis / Gluconeogenesis
dfd00061  Fatty acid biosynthesis
dfd00071  Fatty acid degradation
dfd00190  Oxidative phosphorylation
dfd00220  Arginine biosynthesis
dfd00250  Alanine, aspartate and glutamate metabolism
dfd00280  Valine, leucine and isoleucine degradation
dfd00350  Tyrosine metabolism
dfd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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