KEGG   PATHWAY: dfm00020
Entry
dfm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Dorea formicigenerans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dfm00020  Citrate cycle (TCA cycle)
dfm00020

Module
dfm_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dfm00020]
dfm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dfm00020]
dfm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dfm00020]
Other DBs
GO: 0006099
Organism
Dorea formicigenerans [GN:dfm]
Gene
NQ560_00480  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
NQ560_04900  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
NQ560_14625  hydratase [KO:K01681] [EC:4.2.1.3]
NQ560_07980  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NQ560_00220  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NQ560_03685  2Fe-2S iron-sulfur cluster-binding protein [KO:K00240] [EC:1.3.5.1]
NQ560_00035  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
NQ560_00040  Fe-S-containing hydro-lyase [KO:K01678] [EC:4.2.1.2]
NQ560_03415  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
NQ560_13425  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
NQ560_04065  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
NQ560_04070  thiamine pyrophosphate-dependent enzyme [KO:K00170] [EC:1.2.7.1]
NQ560_04055  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
NQ560_04060  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
NQ560_11015  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dfm00010  Glycolysis / Gluconeogenesis
dfm00053  Ascorbate and aldarate metabolism
dfm00061  Fatty acid biosynthesis
dfm00071  Fatty acid degradation
dfm00190  Oxidative phosphorylation
dfm00220  Arginine biosynthesis
dfm00250  Alanine, aspartate and glutamate metabolism
dfm00280  Valine, leucine and isoleucine degradation
dfm00350  Tyrosine metabolism
dfm00470  D-Amino acid metabolism
dfm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system