KEGG   PATHWAY: dhi03430
Entry
dhi03430                    Pathway                                
Name
Mismatch repair - Dermatobacter hominis
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
dhi03430  Mismatch repair
dhi03430

Other DBs
GO: 0006298
Organism
Dermatobacter hominis [GN:dhi]
Gene
LH044_05135  ATP-dependent DNA helicase UvrD2 [KO:K03657] [EC:5.6.2.4]
LH044_10690  pcrA; DNA helicase PcrA [KO:K03657] [EC:5.6.2.4]
LH044_12690  xseA; exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
LH044_12695  xseB; exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
LH044_13595  ssb; single-stranded DNA-binding protein [KO:K03111]
LH044_00295  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
LH044_13460  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
LH044_12625  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
LH044_20910  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
LH044_13910  hypothetical protein [KO:K02341] [EC:2.7.7.7]
LH044_21775  DEDD exonuclease domain-containing protein [KO:K02342] [EC:2.7.7.7]
LH044_06220  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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