KEGG   PATHWAY: dhy00020
Entry
dhy00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Maridesulfovibrio hydrothermalis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dhy00020  Citrate cycle (TCA cycle)
dhy00020

Module
dhy_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dhy00020]
dhy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dhy00020]
dhy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dhy00020]
Other DBs
GO: 0006099
Organism
Maridesulfovibrio hydrothermalis [GN:dhy]
Gene
DESAM_20078  gltA; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
DESAM_20550  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
DESAM_21680  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DESAM_21578  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DESAM_10089  korA; 2-oxoglutarate synthase subunit korA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DESAM_20736  vorB; Ketoisovalerate oxidoreductase subunit vorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DESAM_10090  korB; 2-oxoglutarate synthase subunit korB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DESAM_20737  Thiamine pyrophosphate protein domain protein TPP-binding [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DESAM_10091  korC; 2-oxoglutarate synthase subunit korC [KO:K00177] [EC:1.2.7.3]
DESAM_20738  Pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K00177] [EC:1.2.7.3]
DESAM_10088  4Fe-4S ferredoxin iron-sulfur binding domain protein [KO:K00176] [EC:1.2.7.3]
DESAM_20735  conserved protein of unknown function [KO:K00176] [EC:1.2.7.3]
DESAM_22202  CoA-binding domain protein [KO:K01902] [EC:6.2.1.5]
DESAM_20178  frdA; Fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
DESAM_20177  frdB; Fumarate reductase iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
DESAM_22346  Fumarate reductase respiratory complex transmembrane subunit [KO:K25996]
DESAM_20179  Fumarate reductase respiratory complex transmembrane subunit [KO:K25996]
DESAM_20176  putative fumarate hydratase subunit alpha [KO:K01677] [EC:4.2.1.2]
DESAM_20175  Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01678] [EC:4.2.1.2]
DESAM_20125  Biotin/lipoyl attachment domain-containing protein [KO:K01960] [EC:6.4.1.1]
DESAM_20122  conserved protein of unknown function [KO:K01610] [EC:4.1.1.49]
DESAM_20169  nifJ; Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
DESAM_22670  nifJ; Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dhy00010  Glycolysis / Gluconeogenesis
dhy00053  Ascorbate and aldarate metabolism
dhy00061  Fatty acid biosynthesis
dhy00071  Fatty acid degradation
dhy00190  Oxidative phosphorylation
dhy00220  Arginine biosynthesis
dhy00250  Alanine, aspartate and glutamate metabolism
dhy00280  Valine, leucine and isoleucine degradation
dhy00350  Tyrosine metabolism
dhy00470  D-Amino acid metabolism
dhy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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