KEGG   PATHWAY: dka00020
Entry
dka00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Desulfurococcus amylolyticus 1221n
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dka00020  Citrate cycle (TCA cycle)
dka00020

Module
dka_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dka00020]
dka_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dka00020]
Other DBs
GO: 0006099
Organism
Desulfurococcus amylolyticus 1221n [GN:dka]
Gene
DKAM_0296  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
DKAM_0535  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DKAM_0534  2-oxoglutarate ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DKAM_0533  2-oxoglutarate oxidoreductase gamma subunit [KO:K00177] [EC:1.2.7.3]
DKAM_0536  2-oxoglutarate ferredoxin oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
DKAM_1040  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
DKAM_1041  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
DKAM_0467  Pyruvate/oxaloacetate carboxyltransferase [KO:K01960] [EC:6.4.1.1]
DKAM_1379  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
DKAM_0579  Pyruvate synthase subunit porA [KO:K00169] [EC:1.2.7.1]
DKAM_1187  Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [KO:K00169] [EC:1.2.7.1]
DKAM_1188  Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [KO:K00170] [EC:1.2.7.1]
DKAM_0578  Pyruvate synthase subunit porB [KO:K00170] [EC:1.2.7.1]
DKAM_0581  Pyruvate synthase subunit porC [KO:K00172] [EC:1.2.7.1]
DKAM_1185  Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit [KO:K00172] [EC:1.2.7.1]
DKAM_0580  Pyruvate synthase subunit porD [KO:K00171] [EC:1.2.7.1]
DKAM_1186  Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dka00010  Glycolysis / Gluconeogenesis
dka00061  Fatty acid biosynthesis
dka00071  Fatty acid degradation
dka00190  Oxidative phosphorylation
dka00220  Arginine biosynthesis
dka00250  Alanine, aspartate and glutamate metabolism
dka00280  Valine, leucine and isoleucine degradation
dka00350  Tyrosine metabolism
dka00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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