KEGG   PATHWAY: dma00630
Entry
dma00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Solidesulfovibrio magneticus
Class
Metabolism; Carbohydrate metabolism
Pathway map
dma00630  Glyoxylate and dicarboxylate metabolism
dma00630

Module
dma_M00621  Glycine cleavage system [PATH:dma00630]
Other DBs
GO: 0046487 0043648
Organism
Solidesulfovibrio magneticus [GN:dma]
Gene
DMR_19670  acs; putative acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
DMR_06660  acs; acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
DMR_17770  acsA; acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
DMR_26930  malate synthase [KO:K01638] [EC:2.3.3.9]
DMR_15780  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
DMR_27480  putative citrate synthase [KO:K01647] [EC:2.3.3.1]
DMR_39020  putative aconitate hydratase [KO:K01681] [EC:4.2.1.3]
DMR_20060  FAD linked oxidase [KO:K00104] [EC:1.1.99.14]
DMR_07470  FAD linked oxidase [KO:K00104] [EC:1.1.99.14]
DMR_31060  FAD linked oxidase [KO:K00104] [EC:1.1.99.14]
DMR_07460  iron-sulfur binding protein [KO:K11473] [EC:1.1.99.14]
DMR_20050  iron-sulfur binding protein [KO:K11473] [EC:1.1.99.14]
DMR_34220  katA; catalase [KO:K03781] [EC:1.11.1.6]
DMR_06460  putative D-isomer specific 2-hydroxyacid dehydrogenase [KO:K00015] [EC:1.1.1.26]
DMR_06110  glnA; glutamine synthetase type I [KO:K01915] [EC:6.3.1.2]
DMR_10730  glnN; glutamine synthetase type III [KO:K01915] [EC:6.3.1.2]
DMR_39990  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
DMR_14920  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
DMR_31780  gcvPA; glycine dehydrogenase [decarboxylating] subunit 1 [KO:K00282] [EC:1.4.4.2]
DMR_31790  gcvPB; glycine dehydrogenase [decarboxylating] subunit 2 [KO:K00283] [EC:1.4.4.2]
DMR_18240  gcvT; aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
DMR_31800  putative dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
DMR_31770  gcvH; glycine cleavage system H protein [KO:K02437]
DMR_35010  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
DMR_35000  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
DMR_28270  ttuD; putative hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
DMR_24460  formate dehydrogenase alpha subunit [KO:K00123] [EC:1.17.1.9]
DMR_37460  fdhA; formate dehydrogenase alpha subunit [KO:K00123] [EC:1.17.1.9]
DMR_15750  formate dehydrogenase alpha subunit [KO:K00123] [EC:1.17.1.9]
DMR_15760  formate dehydrogenase alpha subunit [KO:K00123] [EC:1.17.1.9]
DMR_24450  formate dehydrogenase alpha subunit [KO:K00123] [EC:1.17.1.9]
DMR_37450  fdhB; formate dehydrogenase beta subunit [KO:K00124]
DMR_24440  fdhB; formate dehydrogenase beta subunit [KO:K00124]
DMR_15740  putative formate dehydrogenase, beta subunit [KO:K00124]
DMR_12840  HMC operon ORF 2 protein [KO:K00124]
DMR_38630  iron-sulfur binding protein [KO:K00124]
DMR_21530  hypothetical protein [KO:K07130] [EC:3.5.1.9]
DMR_12050  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
dma00010  Glycolysis / Gluconeogenesis
dma00020  Citrate cycle (TCA cycle)
dma00030  Pentose phosphate pathway
dma00053  Ascorbate and aldarate metabolism
dma00071  Fatty acid degradation
dma00230  Purine metabolism
dma00250  Alanine, aspartate and glutamate metabolism
dma00260  Glycine, serine and threonine metabolism
dma00620  Pyruvate metabolism
dma00710  Carbon fixation by Calvin cycle
dma00750  Vitamin B6 metabolism
dma00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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