KEGG   PATHWAY: dmu00020
Entry
dmu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Desulfurococcus mucosus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dmu00020  Citrate cycle (TCA cycle)
dmu00020

Module
dmu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dmu00020]
dmu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dmu00020]
Other DBs
GO: 0006099
Organism
Desulfurococcus mucosus [GN:dmu]
Gene
Desmu_0677  FAD-dependent pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
Desmu_0318  2-oxoglutarate ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Desmu_0319  2-oxoglutarate ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Desmu_0320  Pyruvate/ketoisovalerate oxidoreductase, catalytic domain protein [KO:K00177] [EC:1.2.7.3]
Desmu_0317  2-oxoglutarate ferredoxin oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
Desmu_1054  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Desmu_1055  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Desmu_0726  Conserved carboxylase region [KO:K01960] [EC:6.4.1.1]
Desmu_0004  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Desmu_1191  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Desmu_0331  pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
Desmu_0332  thiamine pyrophosphate TPP-binding domain-containing protein [KO:K00170] [EC:1.2.7.1]
Desmu_1192  thiamine pyrophosphate TPP-binding domain-containing protein [KO:K00170] [EC:1.2.7.1]
Desmu_0329  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Desmu_1189  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Desmu_0330  pyruvate ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Desmu_1190  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dmu00010  Glycolysis / Gluconeogenesis
dmu00061  Fatty acid biosynthesis
dmu00071  Fatty acid degradation
dmu00190  Oxidative phosphorylation
dmu00220  Arginine biosynthesis
dmu00250  Alanine, aspartate and glutamate metabolism
dmu00280  Valine, leucine and isoleucine degradation
dmu00350  Tyrosine metabolism
dmu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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