KEGG   PATHWAY: dor00020
Entry
dor00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Desulfosporosinus orientis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dor00020  Citrate cycle (TCA cycle)
dor00020

Module
dor_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dor00020]
dor_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dor00020]
dor_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dor00020]
Other DBs
GO: 0006099
Organism
Desulfosporosinus orientis [GN:dor]
Gene
Desor_4010  citrate synthase [KO:K01647] [EC:2.3.3.1]
Desor_3634  aconitate hydratase, putative, Aquifex type [KO:K01681] [EC:4.2.1.3]
Desor_1485  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Desor_1246  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Desor_4829  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Desor_1056  2-oxoacid:ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Desor_1873  2-oxoacid:ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Desor_4062  2-oxoacid:ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Desor_1057  2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Desor_1874  2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Desor_4061  2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Desor_1058  2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family [KO:K00177] [EC:1.2.7.3]
Desor_1875  2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family [KO:K00177] [EC:1.2.7.3]
Desor_4060  2-oxoacid:ferredoxin oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
Desor_1119  NADH:ubiquinone oxidoreductase chain I-like protein [KO:K00176] [EC:1.2.7.3]
Desor_1055  dissimilatory sulfite reductase (desulfoviridin), alpha/beta subunit [KO:K00176] [EC:1.2.7.3]
Desor_1872  dissimilatory sulfite reductase (desulfoviridin), alpha/beta subunit [KO:K00176] [EC:1.2.7.3]
Desor_4063  hypothetical protein [KO:K00176] [EC:1.2.7.3]
Desor_0193  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Desor_0831  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Desor_1680  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Desor_0191  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Desor_0830  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Desor_1679  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Desor_1676  menaquinone-dependent succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Desor_1691  menaquinone-dependent succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Desor_1677  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Desor_1692  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Desor_1675  succinate dehydrogenase/fumarate reductase cytochrome b subunit, b558 family [KO:K00241]
Desor_1690  succinate dehydrogenase, hydrophobic anchor subunit [KO:K00241]
Desor_5263  hydro-lyase, Fe-S type, tartrate/fumarate subfamily [KO:K01677] [EC:4.2.1.2]
Desor_5262  hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily [KO:K01678] [EC:4.2.1.2]
Desor_1423  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Desor_1340  ATP-dependent phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Desor_4331  alkylhydroperoxidase AhpD family core domain protein [KO:K00627] [EC:2.3.1.12]
Desor_4591  2-oxoacid:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
Desor_4590  2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
Desor_4589  2-oxoacid:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Desor_4592  2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family [KO:K00171] [EC:1.2.7.1]
Desor_0023  pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Desor_4087  pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dor00010  Glycolysis / Gluconeogenesis
dor00053  Ascorbate and aldarate metabolism
dor00061  Fatty acid biosynthesis
dor00071  Fatty acid degradation
dor00190  Oxidative phosphorylation
dor00220  Arginine biosynthesis
dor00250  Alanine, aspartate and glutamate metabolism
dor00280  Valine, leucine and isoleucine degradation
dor00350  Tyrosine metabolism
dor00470  D-Amino acid metabolism
dor00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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