KEGG   PATHWAY: dto03430
Entry
dto03430                    Pathway                                
Name
Mismatch repair - Desulfobacula toluolica
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
dto03430  Mismatch repair
dto03430

Other DBs
GO: 0006298
Organism
Desulfobacula toluolica [GN:dto]
Gene
TOL2_C18430  mutS; MutS: DNA mismatch repair protein [KO:K03555]
TOL2_C33890  mutL; MutL: DNA mismatch repair protein [KO:K03572]
TOL2_C03080  uvrD; UvrD: ATP-dependent DNA helicase [KO:K03657] [EC:5.6.2.4]
TOL2_C25860  ATP-dependent DNA helicase, UvrD family [KO:K03657] [EC:5.6.2.4]
TOL2_C13630  sbcB; SbcB: exodeoxyribonclease I (exonuclease I) [KO:K01141] [EC:3.1.11.1]
TOL2_C19780  xseA; XseA: exodeoxyribonuclease VII, large subunit [KO:K03601] [EC:3.1.11.6]
TOL2_C19790  xseB; XseB: exodeoxyribonuclease VII, small subunit [KO:K03602] [EC:3.1.11.6]
TOL2_C14800  recJ; RecJ: single-stranded-DNA-specific exonuclease [KO:K07462] [EC:3.1.-.-]
TOL2_C41130  ssb; Ssb: singel-stranded DNA-binding protein, helix-destabilizing [KO:K03111]
TOL2_C21170  dnaE; DnaE: DNA-directed DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
TOL2_C00010  dnaN; DnaN: DNA polymerase III, beta chain [KO:K02338] [EC:2.7.7.7]
TOL2_C13420  dnaX; DnaX: DNA polymerase III, subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
TOL2_C21020  holA; HolA: putative DNA-directed DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
TOL2_C13270  holB; HolB: putative DNA-directed DNA polymerase III, delta subunit [KO:K02341] [EC:2.7.7.7]
TOL2_C31550  putative exonuclease modulated with PAS domain [KO:K02342] [EC:2.7.7.7]
TOL2_C22180  ligA; LigA: DNA ligase [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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