Entry
Name
Endocytosis - Durio zibethinus (durian)
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Durio zibethinus (durian) [GN:
dzi ]
Gene
111312921 epidermal growth factor receptor substrate 15 isoform X1 [KO:K12472 ]
111317289 epidermal growth factor receptor substrate 15-like 1 isoform X1 [KO:K12472 ]
111293467 epidermal growth factor receptor substrate 15 isoform X1 [KO:K12472 ]
111308755 protein EARLY-RESPONSIVE TO DEHYDRATION 7, chloroplastic-like isoform X1 [KO:K19366 ]
111292513 senescence/dehydration-associated protein At3g51250-like isoform X1 [KO:K19366 ]
111299688 actin-related protein 2/3 complex subunit 1A-like isoform X1 [KO:K05757 ]
111306745 actin-related protein 2/3 complex subunit 2B isoform X1 [KO:K05758 ]
111282056 actin-related protein 2/3 complex subunit 2A isoform X1 [KO:K05758 ]
111299022 actin-related protein 2/3 complex subunit 3-like isoform X1 [KO:K05756 ]
111280071 actin-related protein 2/3 complex subunit 4 isoform X1 [KO:K05755 ]
111295975 probable mediator of RNA polymerase II transcription subunit 37c [KO:K03283 ]
111293781 probable mediator of RNA polymerase II transcription subunit 37c [KO:K03283 ]
111287674 stromal 70 kDa heat shock-related protein, chloroplastic-like isoform X1 [KO:K03283 ]
111277325 LOW QUALITY PROTEIN: F-actin-capping protein subunit alpha [KO:K10364 ]
111312205 probable F-actin-capping protein subunit beta isoform X1 [KO:K10365 ]
111285443 vacuolar protein sorting-associated protein 26A-like isoform X1 [KO:K18466 ]
111303887 vacuolar protein sorting-associated protein 26A-like isoform X1 [KO:K18466 ]
111300119 LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 35A-like [KO:K18468 ]
111291866 vacuolar protein sorting-associated protein 35A-like isoform X1 [KO:K18468 ]
111312820 vacuolar protein sorting-associated protein 35B-like isoform X1 [KO:K18468 ]
111315287 vacuolar protein sorting-associated protein 35B-like isoform X1 [KO:K18468 ]
111275099 vacuolar protein sorting-associated protein 28 homolog 1-like [KO:K12184 ]
111278218 vacuolar protein sorting-associated protein 28 homolog 2-like [KO:K12184 ]
111280426 vacuolar protein sorting-associated protein 28 homolog 2 [KO:K12184 ]
111296961 vacuolar protein-sorting-associated protein 37 homolog 1-like [KO:K12185 ]
111293742 vacuolar protein-sorting-associated protein 37 homolog 1-like isoform X1 [KO:K12185 ]
111311791 vacuolar protein-sorting-associated protein 37 homolog 1-like [KO:K12185 ]
111301613 vacuolar protein sorting-associated protein 22 homolog 1-like [KO:K12188 ]
111276444 vacuolar protein sorting-associated protein 22 homolog 1-like [KO:K12188 ]
111297973 vacuolar protein sorting-associated protein 36 isoform X1 [KO:K12190 ]
111286197 vacuolar protein sorting-associated protein 25-like isoform X1 [KO:K12189 ]
111299747 vacuolar protein sorting-associated protein 20 homolog 1-like [KO:K12195 ]
111316802 vacuolar protein sorting-associated protein 20 homolog 1-like [KO:K12195 ]
111303142 vacuolar protein sorting-associated protein 32 homolog 2-like [KO:K12194 ]
111299145 vacuolar protein sorting-associated protein 32 homolog 2-like [KO:K12194 ]
111286768 vacuolar protein sorting-associated protein 32 homolog 2 [KO:K12194 ]
111303521 vacuolar protein sorting-associated protein 24 homolog 1 [KO:K12193 ]
111296254 vacuolar protein sorting-associated protein 24 homolog 1-like [KO:K12193 ]
111280919 vacuolar protein sorting-associated protein 2 homolog 2 [KO:K12191 ]
111274326 vacuolar protein sorting-associated protein 2 homolog 2-like [KO:K12191 ]
111285306 vacuolar protein sorting-associated protein 2 homolog 1 [KO:K12191 ]
111299178 vacuolar protein sorting-associated protein 2 homolog 1-like isoform X1 [KO:K12191 ]
111314328 vacuolar protein sorting-associated protein 2 homolog 3-like [KO:K12192 ]
111305311 vacuolar protein sorting-associated protein 2 homolog 3-like [KO:K12192 ]
111303794 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like [KO:K12196 ]
111285114 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like [KO:K12196 ]
111288130 protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5-like [KO:K12199 ]
111302247 protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5-like [KO:K12199 ]
111310411 vacuolar protein sorting-associated protein 60.2-like isoform X1 [KO:K12198 ]
111302249 LOW QUALITY PROTEIN: EH domain-containing protein 1-like [KO:K12483 ]
111312218 vacuolar protein sorting-associated protein 45 homolog isoform X1 [KO:K12479 ]
111298945 vacuolar protein sorting-associated protein 45 homolog [KO:K12479 ]
111278215 probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X1 [KO:K12486 ]
111275785 probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X1 [KO:K12486 ]
111280695 ADP-ribosylation factor GTPase-activating protein AGD12-like [KO:K12486 ]
111301663 probable ADP-ribosylation factor GTPase-activating protein AGD5 [KO:K12486 ]
111294766 LOW QUALITY PROTEIN: probable ADP-ribosylation factor GTPase-activating protein AGD11 [KO:K12486 ]
111274095 ADP-ribosylation factor GTPase-activating protein AGD12-like isoform X1 [KO:K12486 ]
111309989 probable ADP-ribosylation factor GTPase-activating protein AGD11 [KO:K12486 ]
111297977 probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X1 [KO:K12486 ]
111282086 ADP-ribosylation factor GTPase-activating protein AGD3-like isoform X1 [KO:K12489 ]
111309331 ADP-ribosylation factor GTPase-activating protein AGD3-like isoform X1 [KO:K12489 ]
111318167 ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X1 [KO:K12489 ]
111289878 LOW QUALITY PROTEIN: ADP-ribosylation factor GTPase-activating protein AGD1-like [KO:K12489 ]
111314168 LOW QUALITY PROTEIN: ADP-ribosylation factor GTPase-activating protein AGD1-like [KO:K12489 ]
111290700 ADP-ribosylation factor GTPase-activating protein AGD3-like [KO:K12489 ]
111282952 ADP-ribosylation factor GTPase-activating protein AGD2-like isoform X1 [KO:K12489 ]
111293853 ADP-ribosylation factor GTPase-activating protein AGD7-like isoform X1 [KO:K12492 ]
111311927 ADP-ribosylation factor GTPase-activating protein AGD7-like isoform X1 [KO:K12492 ]
111297913 probable ADP-ribosylation factor GTPase-activating protein AGD6 [KO:K12492 ]
111289355 probable ADP-ribosylation factor GTPase-activating protein AGD8 [KO:K12493 ]
111276235 probable ADP-ribosylation factor GTPase-activating protein AGD8 isoform X1 [KO:K12493 ]
111283152 brefeldin A-inhibited guanine nucleotide-exchange protein 1-like isoform X1 [KO:K18442 ]
111294908 brefeldin A-inhibited guanine nucleotide-exchange protein 1-like isoform X1 [KO:K18442 ]
111304631 brefeldin A-inhibited guanine nucleotide-exchange protein 2-like isoform X1 [KO:K18442 ]
111309161 brefeldin A-inhibited guanine nucleotide-exchange protein 1-like isoform X1 [KO:K18442 ]
111313798 brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [KO:K18442 ]
111286997 LOW QUALITY PROTEIN: ARF guanine-nucleotide exchange factor GNOM-like [KO:K18443 ]
111291690 ARF guanine-nucleotide exchange factor GNL1-like isoform X1 [KO:K18443 ]
Compound
C04549 1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637 1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981 Phosphatidylinositol-3,4,5-trisphosphate
C11556 1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
Authors
Acconcia F, Sigismund S, Polo S
Title
Ubiquitin in trafficking: the network at work.
Journal
Reference
Authors
Donaldson JG, Porat-Shliom N, Cohen LA
Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
Journal
Reference
Authors
Sorkin A
Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
Journal
Reference
Authors
Raiborg C, Stenmark H
Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
Journal
Reference
Authors
Scita G, Di Fiore PP
Title
The endocytic matrix.
Journal
Reference
Authors
Le Roy C, Wrana JL
Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
Journal
Reference
Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
Title
The early endosome: a busy sorting station for proteins at the crossroads.
Journal
Reference
Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
Title
Viral entry, lipid rafts and caveosomes.
Journal
Reference
Authors
Grant BD, Donaldson JG
Title
Pathways and mechanisms of endocytic recycling.
Journal
Reference
Authors
Cullen PJ, Korswagen HC
Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
Journal
Related pathway
dzi04070 Phosphatidylinositol signaling system
dzi04130 SNARE interactions in vesicular transport
KO pathway
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