KEGG   PATHWAY: efm03430
Entry
efm03430                    Pathway                                
Name
Mismatch repair - Enterococcus faecium ATCC 8459 = NRRL B-2354
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
efm03430  Mismatch repair
efm03430

Other DBs
GO: 0006298
Organism
Enterococcus faecium ATCC 8459 = NRRL B-2354 [GN:efm]
Gene
M7W_362  DNA mismatch repair protein MutS [KO:K03555]
M7W_901  Recombination inhibitory protein MutS2 [KO:K07456]
M7W_556  Clostridial MutS2-related protein [KO:K07456]
M7W_363  DNA mismatch repair protein MutL [KO:K03572]
M7W_1464  hypothetical protein [KO:K03657] [EC:5.6.2.4]
M7W_630  DNA helicase II [KO:K03657] [EC:5.6.2.4]
M7W_1259  ATP-dependent DNA helicase UvrD, PcrA [KO:K03657] [EC:5.6.2.4]
M7W_562  hypothetical protein [KO:K03657] [EC:5.6.2.4]
M7W_2120  Exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
M7W_2119  Exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
M7W_230  Single-stranded DNA-binding protein [KO:K03111]
M7W_103  Single-stranded DNA-binding protein [KO:K03111]
M7W_1475  DNA polymerase III alpha subunit [KO:K02337] [EC:2.7.7.7]
M7W_1195  DNA polymerase III alpha subunit [KO:K03763] [EC:2.7.7.7]
M7W_224  DNA polymerase III beta subunit [KO:K02338] [EC:2.7.7.7]
M7W_2162  DNA polymerase III subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
M7W_1746  DNA polymerase III delta subunit [KO:K02340] [EC:2.7.7.7]
M7W_2157  DNA polymerase III delta prime subunit [KO:K02341] [EC:2.7.7.7]
M7W_843  Exonuclease [KO:K02342] [EC:2.7.7.7]
M7W_130  DNA polymerase III alpha subunit [KO:K02342] [EC:2.7.7.7]
M7W_1260  DNA ligase [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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