KEGG   PATHWAY: ehx00020
Entry
ehx00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Emiliania huxleyi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ehx00020  Citrate cycle (TCA cycle)
ehx00020

Module
ehx_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ehx00020]
ehx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ehx00020]
Other DBs
GO: 0006099
Organism
Emiliania huxleyi [GN:ehx]
Gene
EMIHUDRAFT_467883  mitochondrial citrate synthase [KO:K01647] [EC:2.3.3.1]
EMIHUDRAFT_54130  alpha subunit of isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
EMIHUDRAFT_456579  hypothetical protein [KO:K00382] [EC:1.8.1.4]
EMIHUDRAFT_452415  putative dihydrolipoamide dehydrogenase 1 [KO:K00382] [EC:1.8.1.4]
EMIHUDRAFT_442074  DLD1; putative dihydrolipoamide dehydrogenase 1 [KO:K00382] [EC:1.8.1.4]
EMIHUDRAFT_420435  DLD2; putative Lipoamide dehydrogenase 1 [KO:K00382] [EC:1.8.1.4]
EMIHUDRAFT_417649  alpha subunit of succinate-CoA ligase [KO:K01899] [EC:6.2.1.4 6.2.1.5]
EMIHUDRAFT_439301  alpha subunit of succinate-CoA ligase [KO:K01899] [EC:6.2.1.4 6.2.1.5]
EMIHUDRAFT_436533  succinyl-coa ligase [KO:K01900] [EC:6.2.1.4 6.2.1.5]
EMIHUDRAFT_450514  succinate dehydrogenase flavo protein subunit,subunit A Fp subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
EMIHUDRAFT_415062  succinate dehydrogenase iron-sulfur subunit, subunit B [KO:K00235] [EC:1.3.5.1]
EMIHUDRAFT_432409  hypothetical protein [KO:K00236]
EMIHUDRAFT_438455  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
EMIHUDRAFT_422534  FH; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
EMIHUDRAFT_448597  NAD-dependent malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
EMIHUDRAFT_451022  NAD-dependent malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
EMIHUDRAFT_414497  NAD-dependent malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
EMIHUDRAFT_558314  PYC1; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
EMIHUDRAFT_444355  PEPCK_1; putative phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
EMIHUDRAFT_436758  PEPCK_2; putative phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
EMIHUDRAFT_428425  pyruvate dehydrogenase E1, alpha subunit [KO:K00161] [EC:1.2.4.1]
EMIHUDRAFT_359239  pyruvate dehydrogenase E1, alpha subunit [KO:K00161] [EC:1.2.4.1]
EMIHUDRAFT_444048  hypothetical protein [KO:K00162] [EC:1.2.4.1]
EMIHUDRAFT_434751  pyruvate dehydrogenase E1, beta subunit [KO:K00162] [EC:1.2.4.1]
EMIHUDRAFT_62303  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
EMIHUDRAFT_309512  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ehx00010  Glycolysis / Gluconeogenesis
ehx00053  Ascorbate and aldarate metabolism
ehx00061  Fatty acid biosynthesis
ehx00062  Fatty acid elongation
ehx00071  Fatty acid degradation
ehx00190  Oxidative phosphorylation
ehx00220  Arginine biosynthesis
ehx00250  Alanine, aspartate and glutamate metabolism
ehx00280  Valine, leucine and isoleucine degradation
ehx00350  Tyrosine metabolism
ehx00470  D-Amino acid metabolism
ehx00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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