KEGG   PATHWAY: elim00020
Entry
elim00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Eubacterium limosum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
elim00020  Citrate cycle (TCA cycle)
elim00020

Module
elim_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:elim00020]
elim_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:elim00020]
Other DBs
GO: 0006099
Organism
Eubacterium limosum [GN:elim]
Gene
B2M23_17935  citrate synthase [KO:K01647] [EC:2.3.3.1]
B2M23_07205  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
B2M23_14810  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
B2M23_13215  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B2M23_04870  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B2M23_09115  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
B2M23_11700  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
B2M23_09120  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
B2M23_11695  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
B2M23_09125  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
B2M23_09110  2-oxoacid:acceptor oxidoreductase [KO:K00176] [EC:1.2.7.3]
B2M23_15600  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
B2M23_15605  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
B2M23_00300  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
B2M23_13210  hypothetical protein [KO:K00627] [EC:2.3.1.12]
B2M23_03555  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
B2M23_04445  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
B2M23_03560  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
B2M23_04450  2-ketoisovalerate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
B2M23_03545  pyruvate synthase [KO:K00172] [EC:1.2.7.1]
B2M23_04435  hypothetical protein [KO:K00172] [EC:1.2.7.1]
B2M23_03550  ferredoxin [KO:K00171] [EC:1.2.7.1]
B2M23_04440  pyruvate ferredoxin oxidoreductase [KO:K00171] [EC:1.2.7.1]
B2M23_14820  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
elim00010  Glycolysis / Gluconeogenesis
elim00053  Ascorbate and aldarate metabolism
elim00061  Fatty acid biosynthesis
elim00071  Fatty acid degradation
elim00190  Oxidative phosphorylation
elim00220  Arginine biosynthesis
elim00250  Alanine, aspartate and glutamate metabolism
elim00280  Valine, leucine and isoleucine degradation
elim00350  Tyrosine metabolism
elim00470  D-Amino acid metabolism
elim00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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