KEGG   PATHWAY: elm00020
Entry
elm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Eubacterium callanderi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
elm00020  Citrate cycle (TCA cycle)
elm00020

Module
elm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:elm00020]
elm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:elm00020]
Other DBs
GO: 0006099
Organism
Eubacterium callanderi [GN:elm]
Gene
ELI_2243  hypothetical protein [KO:K01647] [EC:2.3.3.1]
ELI_3864  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
ELI_1525  isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
ELI_0377  hypothetical protein [KO:K00382] [EC:1.8.1.4]
ELI_1125  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ELI_0791  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
ELI_3455  hypothetical protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
ELI_0790  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
ELI_3454  hypothetical protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
ELI_3453  hypothetical protein [KO:K00177] [EC:1.2.7.3]
ELI_3456  conserved domain protein [KO:K00176] [EC:1.2.7.3]
ELI_1697  hydro-lyase [KO:K01677] [EC:4.2.1.2]
ELI_1698  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
ELI_0723  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
ELI_1124  catalytic domain of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
ELI_0279  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
ELI_2788  hypothetical protein [KO:K00169] [EC:1.2.7.1]
ELI_2787  hypothetical protein [KO:K00170] [EC:1.2.7.1]
ELI_0280  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
ELI_0277  pyruvate/ketoisovalerate oxidoreductase [KO:K00172] [EC:1.2.7.1]
ELI_2790  hypothetical protein [KO:K00172] [EC:1.2.7.1]
ELI_0278  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K00171] [EC:1.2.7.1]
ELI_2789  hypothetical protein [KO:K00171] [EC:1.2.7.1]
ELI_1527  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
elm00010  Glycolysis / Gluconeogenesis
elm00053  Ascorbate and aldarate metabolism
elm00061  Fatty acid biosynthesis
elm00071  Fatty acid degradation
elm00190  Oxidative phosphorylation
elm00220  Arginine biosynthesis
elm00250  Alanine, aspartate and glutamate metabolism
elm00280  Valine, leucine and isoleucine degradation
elm00350  Tyrosine metabolism
elm00470  D-Amino acid metabolism
elm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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