KEGG   PATHWAY: eraf00020
Entry
eraf00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Enterococcus raffinosus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eraf00020  Citrate cycle (TCA cycle)
eraf00020

Module
eraf_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eraf00020]
eraf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eraf00020]
eraf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eraf00020]
Other DBs
GO: 0006099
Organism
Enterococcus raffinosus [GN:eraf]
Gene
J9537_09090  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
J9537_09095  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
J9537_09100  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
J9537_00465  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
J9537_08120  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
J9537_12605  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
J9537_08075  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
J9537_07700  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
J9537_08135  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
J9537_08130  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
J9537_00460  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
J9537_08125  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
J9537_08000  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
J9537_08540  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eraf00010  Glycolysis / Gluconeogenesis
eraf00053  Ascorbate and aldarate metabolism
eraf00061  Fatty acid biosynthesis
eraf00190  Oxidative phosphorylation
eraf00220  Arginine biosynthesis
eraf00250  Alanine, aspartate and glutamate metabolism
eraf00280  Valine, leucine and isoleucine degradation
eraf00350  Tyrosine metabolism
eraf00470  D-Amino acid metabolism
eraf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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