KEGG   PATHWAY: esc03410
Entry
esc03410                    Pathway                                
Name
Base excision repair - Enterobacter lignolyticus SCF1
Description
Base excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair initiated by lesion-specific DNA glycosylases and completed by either of the two sub-pathways: short-patch BER where only one nucleotide is replaced and long-patch BER where 2-13 nucleotides are replaced. Each sub-pathway of BER relies on the formation of protein complexes that assemble at the site of the DNA lesion and facilitate repair in a coordinated fashion. This process of complex formation appears to provide an increase in specificity and efficiency to the BER pathway, thereby facilitating the maintenance of genome integrity by preventing the accumulation of highly toxic repair intermediates.
Class
Genetic Information Processing; Replication and repair
Pathway map
esc03410  Base excision repair
esc03410

Other DBs
GO: 0006284 0006285 0006286 0006287 0006288
Organism
Enterobacter lignolyticus SCF1 [GN:esc]
Gene
Entcl_2197  endonuclease III [KO:K10773] [EC:3.2.2.- 4.2.99.18]
Entcl_1167  uracil-DNA glycosylase [KO:K03648] [EC:3.2.2.27]
Entcl_0794  A/G-specific adenine glycosylase [KO:K03575] [EC:3.2.2.31]
Entcl_0113  formamidopyrimidine-DNA glycosylase [KO:K10563] [EC:3.2.2.23 4.2.99.18]
Entcl_3107  DNA glycosylase/AP lyase, H2TH DNA-binding protein [KO:K05522] [EC:3.2.2.- 4.2.99.18]
Entcl_1622  DNA-3-methyladenine glycosylase II [KO:K01247] [EC:3.2.2.21]
Entcl_0195  DNA-3-methyladenine glycosylase I [KO:K01246] [EC:3.2.2.20]
Entcl_0695  Uracil-DNA glycosylase superfamily [KO:K03649] [EC:3.2.2.28]
Entcl_2588  exodeoxyribonuclease III [KO:K01142] [EC:3.1.11.2]
Entcl_1542  apurinic endonuclease Apn1 [KO:K01151] [EC:3.1.21.2]
Entcl_4391  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
Entcl_0861  single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
Entcl_1343  DNA ligase, NAD-dependent [KO:K01972] [EC:6.5.1.2]
Entcl_0102  DNA ligase (NAD(+)) [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Krwawicz J, Arczewska KD, Speina E, Maciejewska A, Grzesiuk E.
  Title
Bacterial DNA repair genes and their eukaryotic homologues: 1. Mutations in genes involved in base excision repair (BER) and DNA-end processors and their implication in mutagenesis and human disease.
  Journal
Acta Biochim Pol 54:413-34 (2007)
Reference
  Authors
Almeida KH, Sobol RW.
  Title
A unified view of base excision repair: lesion-dependent protein complexes regulated by post-translational modification.
  Journal
DNA Repair (Amst) 6:695-711 (2007)
DOI:10.1016/j.dnarep.2007.01.009
Reference
  Authors
Moen MN, Knaevelsrud I, Haugland GT, Grosvik K, Birkeland NK, Klungland A, Bjelland S
  Title
Uracil-DNA glycosylase of Thermoplasma acidophilum directs long-patch base excision repair, which is promoted by deoxynucleoside triphosphates and ATP/ADP, into short-patch repair.
  Journal
J Bacteriol 193:4495-508 (2011)
DOI:10.1128/JB.00233-11
Reference
  Authors
Ikeda S, Seki S.
  Title
[Base excision repair: DNA glycosylase and AP endonuclease]
  Journal
Tanpakushitsu Kakusan Koso 46:916-23 (2001)
KO pathway
ko03410   
LinkDB

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