KEGG   PATHWAY: fbc03430
Entry
fbc03430                    Pathway                                
Name
Mismatch repair - Maribacter sp. HTCC2170
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
fbc03430  Mismatch repair
fbc03430

Other DBs
GO: 0006298
Organism
Maribacter sp. HTCC2170 [GN:fbc]
Gene
FB2170_02830  DNA mismatch repair protein [KO:K03555]
FB2170_11946  putative DNA mismatch repair MutS protein [KO:K07456]
FB2170_09581  putative DNA mismatch repair protein [KO:K03572]
FB2170_12186  putative helicase [KO:K03657] [EC:5.6.2.4]
FB2170_06385  single-stranded-DNA-specific exonuclease recJ [KO:K07462] [EC:3.1.-.-]
FB2170_04360  single-strand binding protein [KO:K03111]
FB2170_07474  single-strand binding protein [KO:K03111]
FB2170_03950  DNA polymerase III alpha subunit [KO:K02337] [EC:2.7.7.7]
FB2170_04075  DNA polymerase III alpha subunit [KO:K02337] [EC:2.7.7.7]
FB2170_10186  DNA polymerase III, beta chain [KO:K02338] [EC:2.7.7.7]
FB2170_15203  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
FB2170_12161  hypothetical protein [KO:K02340] [EC:2.7.7.7]
FB2170_05875  putative DNA polymerase III, delta subunit [KO:K02341] [EC:2.7.7.7]
FB2170_09746  DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
FB2170_15966  putative DNA polymerase III epsilon chain [KO:K02342] [EC:2.7.7.7]
FB2170_02150  DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
FB2170_13316  DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
FB2170_13426  DNA ligase [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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