KEGG   PATHWAY: fdu00020
Entry
fdu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Faecalibacterium duncaniae JCM 31915
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fdu00020  Citrate cycle (TCA cycle)
fdu00020

Module
fdu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fdu00020]
fdu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fdu00020]
fdu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fdu00020]
Other DBs
GO: 0006099
Organism
Faecalibacterium duncaniae JCM 31915 [GN:fdu]
Gene
GXM22_10945  citrate synthase [KO:K01647] [EC:2.3.3.1]
GXM22_06325  hydratase [KO:K01681] [EC:4.2.1.3]
GXM22_01265  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
GXM22_03310  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
GXM22_03305  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
GXM22_02955  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
GXM22_02950  Fe-S-containing hydro-lyase [KO:K01678] [EC:4.2.1.2]
GXM22_14630  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
GXM22_00060  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fdu00010  Glycolysis / Gluconeogenesis
fdu00061  Fatty acid biosynthesis
fdu00071  Fatty acid degradation
fdu00190  Oxidative phosphorylation
fdu00220  Arginine biosynthesis
fdu00250  Alanine, aspartate and glutamate metabolism
fdu00280  Valine, leucine and isoleucine degradation
fdu00350  Tyrosine metabolism
fdu00470  D-Amino acid metabolism
fdu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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