KEGG   PATHWAY: fer03030
Entry
fer03030                    Pathway                                
Name
DNA replication - Ferrovibrio terrae
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
fer03030  DNA replication
fer03030

Organism
Ferrovibrio terrae [GN:fer]
Gene
FNB15_06345  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
FNB15_20565  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
FNB15_13365  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
FNB15_17635  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
FNB15_03860  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
FNB15_18150  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
FNB15_04530  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
FNB15_19290  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
FNB15_12310  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
FNB15_14630  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
FNB15_20345  DNA primase [KO:K02316] [EC:2.7.7.101]
FNB15_16695  ssb; single-stranded DNA-binding protein [KO:K03111]
FNB15_12245  rnhA; ribonuclease HI [KO:K03469] [EC:3.1.26.4]
FNB15_08570  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
FNB15_01585  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
FNB15_13360  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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