KEGG   PATHWAY: ffu04144
Entry
ffu04144                    Pathway                                
Name
Endocytosis - Fulvia fulva
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
Pathway map
ffu04144  Endocytosis
ffu04144

Other DBs
GO: 0006897
Organism
Fulvia fulva [GN:ffu]
Gene
CLAFUR5_01038  ADP-ribosylation factor 6 [KO:K07941]
CLAFUR5_13085  Phosphatidylinositol 4-phosphate 5-kinase its3 [KO:K00889] [EC:2.7.1.68]
CLAFUR5_02995  Phospholipase D1 [KO:K01115] [EC:3.1.4.4]
CLAFUR5_03634  Phospholipase D [KO:K01115] [EC:3.1.4.4]
CLAFUR5_04374  Phospholipase D1 [KO:K01115] [EC:3.1.4.4]
CLAFUR5_05107  putative clathrin heavy chain [KO:K04646]
CLAFUR5_09865  AP-2 complex subunit alpha [KO:K11824]
CLAFUR5_08550  AP-1 complex subunit beta [KO:K11825]
CLAFUR5_06659  AP-2 complex subunit mu [KO:K11826]
CLAFUR5_09423  AP-2 complex subunit sigma [KO:K11827]
CLAFUR5_01527  Regulator of cytoskeleton and endocytosis [KO:K12562]
CLAFUR5_04309  ENTH domain-containing protein [KO:K12471]
CLAFUR5_06252  Epsin-1 [KO:K12471]
CLAFUR5_03820  uncharacterized protein [KO:K12472]
CLAFUR5_04631  uncharacterized protein [KO:K19366]
CLAFUR5_13589  putative E3 ubiquitin-protein ligase HulA [KO:K10591] [EC:2.3.2.26]
CLAFUR5_01997  Proline-rich protein LAS17 [KO:K23612]
CLAFUR5_01268  Actin-related protein 2 [KO:K17260]
CLAFUR5_10832  Actin-related protein 3 [KO:K18584]
CLAFUR5_12436  Actin-related protein 2/3 complex subunit 1 [KO:K05757]
CLAFUR5_08497  Actin-related protein 2/3 complex subunit 2 [KO:K05758]
CLAFUR5_06816  Actin-related protein 2/3 complex subunit 3 [KO:K05756]
CLAFUR5_01399  Actin-related protein 2/3 complex subunit 4 [KO:K05755]
CLAFUR5_10128  Actin-related protein 2/3 complex subunit 5 [KO:K05754]
CLAFUR5_02867  Heat shock protein 2 [KO:K03283]
CLAFUR5_07990  Ribosome-associated molecular chaperone SSB1 [KO:K03283]
CLAFUR5_00024  F-actin-capping protein subunit alpha [KO:K10364]
CLAFUR5_08565  F-actin-capping protein subunit beta [KO:K10365]
CLAFUR5_13600  Vacuolar protein sorting-associated protein 29 [KO:K18467]
CLAFUR5_01006  Vacuolar protein sorting-associated protein 26 [KO:K18466]
CLAFUR5_10666  Vacuolar protein sorting-associated protein 35 [KO:K18468]
CLAFUR5_14248  Sorting nexin-3 [KO:K17918]
CLAFUR5_01309  Ubiquitin carboxyl-terminal hydrolase 4 [KO:K11839] [EC:3.4.19.12]
CLAFUR5_12668  AMSH-like protease sst2 [KO:K11866] [EC:3.4.19.12]
CLAFUR5_05595  Ypt/Rab-type GTPase ypt7 [KO:K07897]
CLAFUR5_01310  Vacuolar protein sorting-associated protein 27 [KO:K12182]
CLAFUR5_00713  Class E vacuolar protein-sorting machinery protein HSE1 [KO:K04705]
CLAFUR5_01530  uncharacterized protein [KO:K12183]
CLAFUR5_04559  Vacuolar protein sorting-associated protein 28 [KO:K12184]
CLAFUR5_10443  Vacuolar-sorting protein SNF8 [KO:K12188]
CLAFUR5_08684  Vacuolar protein-sorting-associated protein 36 [KO:K12190]
CLAFUR5_01001  Vacuolar protein-sorting-associated protein 25 [KO:K12189]
CLAFUR5_01394  Charged multivesicular body protein 6 [KO:K12195]
CLAFUR5_04406  Vacuolar-sorting protein SNF7 [KO:K12194]
CLAFUR5_11124  Vacuolar protein-sorting-associated protein 24 [KO:K12193]
CLAFUR5_03088  DOA4-independent degradation protein 4 [KO:K12191]
CLAFUR5_11188  uncharacterized protein [KO:K15053]
CLAFUR5_13353  Vacuolar protein sorting-associated protein 4 [KO:K12196]
CLAFUR5_08387  Vacuolar protein sorting-associated protein vts1 [KO:K12199]
CLAFUR5_09823  Vacuolar protein-sorting-associated protein 46 [KO:K12197]
CLAFUR5_05435  Charged multivesicular body protein 5 [KO:K12198]
CLAFUR5_09366  uncharacterized protein [KO:K19476]
CLAFUR5_13931  pH-response regulator protein PalA/RIM20 [KO:K12200]
CLAFUR5_01345  Vacuolar protein sorting-associated protein vps5 [KO:K17917]
CLAFUR5_13871  GTP-binding protein RhoA [KO:K04513]
CLAFUR5_00975  Vacuolar protein sorting-associated protein 21 [KO:K07889]
CLAFUR5_01578  GTP-binding protein ypt5 [KO:K07889]
CLAFUR5_02984  Vacuolar segregation protein pep7 [KO:K12481]
CLAFUR5_07346  Vacuolar protein sorting-associated protein 45 [KO:K12479]
CLAFUR5_08755  Sorting nexin-4 [KO:K17919]
CLAFUR5_09843  GTP-binding protein ypt2 [KO:K07901]
CLAFUR5_03282  Ras-related protein Rab-11A [KO:K07904]
CLAFUR5_12076  Kinesin heavy chain [KO:K10396]
CLAFUR5_06098  Cell division control protein 42 [KO:K04393]
CLAFUR5_00515  uncharacterized protein [KO:K12486]
CLAFUR5_12214  putative ribosylation factor GTPase-activating protein cnt6 [KO:K12488]
CLAFUR5_05714  ADP-ribosylation factor GTPase-activating protein GCS1 [KO:K12492]
CLAFUR5_07822  ADP-ribosylation factor GTPase-activating protein glo3 [KO:K12493]
CLAFUR5_03673  uncharacterized protein [KO:K18442]
CLAFUR5_11268  uncharacterized protein [KO:K18443]
CLAFUR5_01115  ADP-ribosylation factor [KO:K07937]
Compound
C00035  GDP
C00044  GTP
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637  1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981  Phosphatidylinositol-3,4,5-trisphosphate
C11556  1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
  Authors
Acconcia F, Sigismund S, Polo S
  Title
Ubiquitin in trafficking: the network at work.
  Journal
Exp Cell Res 315:1610-8 (2009)
DOI:10.1016/j.yexcr.2008.10.014
Reference
  Authors
Donaldson JG, Porat-Shliom N, Cohen LA
  Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
  Journal
Cell Signal 21:1-6 (2009)
DOI:10.1016/j.cellsig.2008.06.020
Reference
  Authors
Sorkin A
  Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
  Journal
Curr Opin Cell Biol 16:392-9 (2004)
DOI:10.1016/j.ceb.2004.06.001
Reference
  Authors
Raiborg C, Stenmark H
  Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
  Journal
Nature 458:445-52 (2009)
DOI:10.1038/nature07961
Reference
  Authors
Scita G, Di Fiore PP
  Title
The endocytic matrix.
  Journal
Nature 463:464-73 (2010)
DOI:10.1038/nature08910
Reference
  Authors
Le Roy C, Wrana JL
  Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
  Journal
Nat Rev Mol Cell Biol 6:112-26 (2005)
DOI:10.1038/nrm1571
Reference
  Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
  Title
The early endosome: a busy sorting station for proteins at the crossroads.
  Journal
Histol Histopathol 25:99-112 (2010)
DOI:10.14670/HH-25.99
Reference
  Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
  Title
Viral entry, lipid rafts and caveosomes.
  Journal
Ann Med 37:394-403 (2005)
DOI:10.1080/07853890510011976
Reference
  Authors
Grant BD, Donaldson JG
  Title
Pathways and mechanisms of endocytic recycling.
  Journal
Nat Rev Mol Cell Biol 10:597-608 (2009)
DOI:10.1038/nrm2755
Reference
  Authors
Cullen PJ, Korswagen HC
  Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
  Journal
Nat Cell Biol 14:29-37 (2012)
DOI:10.1038/ncb2374
Related
pathway
ffu04070  Phosphatidylinositol signaling system
ffu04130  SNARE interactions in vesicular transport
KO pathway
ko04144   
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