KEGG   PATHWAY: fvr03008
Entry
fvr03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Fusarium verticillioides
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
fvr03008  Ribosome biogenesis in eukaryotes
fvr03008

Organism
Fusarium verticillioides [GN:fvr]
Gene
FVEG_02295  casein kinase II subunit beta-1 [KO:K03115]
FVEG_01418  casein kinase II subunit beta-2 [KO:K03115]
FVEG_08574  CMGC/CK2 protein kinase [KO:K03097] [EC:2.7.11.1]
FVEG_00518  CMGC/CK2 protein kinase [KO:K03097] [EC:2.7.11.1]
FVEG_05015  hypothetical protein [KO:K14544]
FVEG_02953  hypothetical protein [KO:K14545]
FVEG_11238  hypothetical protein [KO:K14546]
FVEG_00311  hypothetical protein [KO:K14548]
FVEG_02714  hypothetical protein [KO:K14549]
FVEG_05318  hypothetical protein [KO:K14550]
FVEG_00659  hypothetical protein [KO:K14552]
FVEG_00943  hypothetical protein [KO:K14553]
FVEG_06065  hypothetical protein [KO:K14554]
FVEG_05200  hypothetical protein [KO:K14555]
FVEG_08120  hypothetical protein [KO:K14556]
FVEG_04707  hypothetical protein [KO:K14557]
FVEG_07893  periodic tryptophan protein 2 [KO:K14558]
FVEG_02756  hypothetical protein [KO:K14559]
FVEG_02998  U3 small nucleolar ribonucleoprotein IMP3 [KO:K14560]
FVEG_02646  hypothetical protein [KO:K14561]
FVEG_07385  hypothetical protein [KO:K14563] [EC:2.1.1.-]
FVEG_11633  hypothetical protein [KO:K14564]
FVEG_11587  hypothetical protein [KO:K14565]
FVEG_02777  ribonucleoprotein-associated protein [KO:K12845]
FVEG_07963  centromere/microtubule-binding protein cbf5 [KO:K11131] [EC:5.4.99.-]
FVEG_03035  H/ACA ribonucleoprotein complex subunit 2 [KO:K11129]
FVEG_05048  H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
FVEG_15892  H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
FVEG_07956  hypothetical protein [KO:K14566]
FVEG_01872  hypothetical protein [KO:K14567]
FVEG_04904  ribonuclease III [KO:K03685] [EC:3.1.26.3]
FVEG_12282  hypothetical protein [KO:K03685] [EC:3.1.26.3]
FVEG_05090  ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
FVEG_06407  hypothetical protein [KO:K14569]
FVEG_00450  tRNA(Met) cytidine acetyltransferase [KO:K14521] [EC:2.3.1.-]
FVEG_01229  18S rRNA biogenesis protein RCL1 [KO:K11108]
FVEG_02025  hypothetical protein [KO:K01164] [EC:3.1.26.5]
FVEG_16009  hypothetical protein [KO:K14522] [EC:3.1.26.5]
FVEG_10373  ribonuclease P protein subunit POP4 [KO:K03538] [EC:3.1.26.5]
FVEG_15430  hypothetical protein [KO:K03537] [EC:3.1.26.5]
FVEG_03977  hypothetical protein [KO:K14526] [EC:3.1.26.5]
FVEG_16198  hypothetical protein [KO:K14528] [EC:3.1.26.5]
FVEG_09583  ribonuclease P/MRP protein subunit RPP1 [KO:K03539] [EC:3.1.26.5]
FVEG_09176  hypothetical protein [KO:K14532]
FVEG_08905  hypothetical protein [KO:K14530] [EC:3.1.26.5]
FVEG_01292  hypothetical protein [KO:K14570] [EC:3.1.-.-]
FVEG_03038  hypothetical protein [KO:K14570] [EC:3.1.-.-]
FVEG_00843  hypothetical protein [KO:K13288] [EC:3.1.-.-]
FVEG_05188  alkaline phosphatase D [KO:K12618] [EC:3.1.13.-]
FVEG_14169  5'-3' exoribonuclease 2 [KO:K12619] [EC:3.1.13.-]
FVEG_06124  nucleolar GTP-binding protein [KO:K06943]
FVEG_09462  hypothetical protein [KO:K14537]
FVEG_01313  hypothetical protein [KO:K14538]
FVEG_11558  hypothetical protein [KO:K14571]
FVEG_05323  hypothetical protein [KO:K14572]
FVEG_09187  hypothetical protein [KO:K14573]
FVEG_06561  UPF0271 protein [KO:K11883]
FVEG_01929  CK1/CK1/CK1-D protein kinase [KO:K14758] [EC:2.7.11.1]
FVEG_01222  GTP-binding nuclear protein GSP1/Ran [KO:K07936]
FVEG_11574  hypothetical protein [KO:K14290]
FVEG_06350  nonsense-mediated mRNA decay protein 3 [KO:K07562]
FVEG_01005  hypothetical protein [KO:K14284]
FVEG_04523  hypothetical protein [KO:K14285]
FVEG_07099  eukaryotic translation initiation factor 6 [KO:K03264]
FVEG_14046  hypothetical protein [KO:K14574]
FVEG_09131  elongation factor 2 [KO:K14536] [EC:3.6.5.-]
FVEG_07968  hypothetical protein [KO:K14539] [EC:3.6.1.-]
FVEG_06177  hypothetical protein [KO:K14575]
FVEG_07788  dTMP kinase [KO:K18532] [EC:2.7.4.3]
FVEG_05648  RIO kinase 1 [KO:K07178] [EC:2.7.11.1]
FVEG_06398  Atypical/RIO/RIO2 protein kinase [KO:K07179] [EC:2.7.11.1]
FVEG_17745  18S ribosomal RNA [KO:K01979]
FVEG_17746  28S ribosomal RNA [KO:K01982]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
fvr03010  Ribosome
KO pathway
ko03008   
LinkDB

DBGET integrated database retrieval system