KEGG   PATHWAY: gcy00020
Entry
gcy00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Gloeomargaritales cyanobacterium VI4D9
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gcy00020  Citrate cycle (TCA cycle)
gcy00020

Module
gcy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gcy00020]
gcy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gcy00020]
Other DBs
GO: 0006099
Organism
Gloeomargaritales cyanobacterium VI4D9 [GN:gcy]
Gene
LQF76_12140  citrate synthase [KO:K01647] [EC:2.3.3.1]
LQF76_01825  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
LQF76_02150  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LQF76_03395  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LQF76_03410  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LQF76_08310  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LQF76_03405  hypothetical protein [KO:K00241]
LQF76_02195  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LQF76_06095  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
LQF76_06100  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
LQF76_13515  dihydrolipoamide acetyltransferase family protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gcy00010  Glycolysis / Gluconeogenesis
gcy00053  Ascorbate and aldarate metabolism
gcy00061  Fatty acid biosynthesis
gcy00071  Fatty acid degradation
gcy00190  Oxidative phosphorylation
gcy00220  Arginine biosynthesis
gcy00250  Alanine, aspartate and glutamate metabolism
gcy00280  Valine, leucine and isoleucine degradation
gcy00350  Tyrosine metabolism
gcy00470  D-Amino acid metabolism
gcy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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