KEGG   PATHWAY: gfe00020
Entry
gfe00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Geosporobacter ferrireducens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gfe00020  Citrate cycle (TCA cycle)
gfe00020

Module
gfe_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gfe00020]
gfe_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gfe00020]
Other DBs
GO: 0006099
Organism
Geosporobacter ferrireducens [GN:gfe]
Gene
Gferi_25300  citrate synthase [KO:K01647] [EC:2.3.3.1]
Gferi_25310  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Gferi_08425  hydratase [KO:K01681] [EC:4.2.1.3]
Gferi_25305  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
Gferi_24900  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Gferi_16645  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Gferi_17225  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Gferi_09290  hypothetical protein [KO:K00382] [EC:1.8.1.4]
Gferi_06340  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Gferi_00070  2-oxoglutarate synthase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Gferi_09095  pyruvate ferredoxin oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Gferi_18830  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Gferi_00065  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Gferi_09100  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Gferi_18835  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Gferi_27335  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
Gferi_00060  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
Gferi_18840  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
Gferi_00075  ferredoxin [KO:K00176] [EC:1.2.7.3]
Gferi_18825  2-oxoacid:acceptor oxidoreductase [KO:K00176] [EC:1.2.7.3]
Gferi_16865  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
Gferi_16850  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
Gferi_16855  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
Gferi_17635  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Gferi_16630  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
Gferi_16635  2-oxoisovalerate dehydrogenase [KO:K00162] [EC:1.2.4.1]
Gferi_24895  PdhC [KO:K00627] [EC:2.3.1.12]
Gferi_17220  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Gferi_16640  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Gferi_12280  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
Gferi_12275  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
Gferi_12290  pyruvate synthase [KO:K00172] [EC:1.2.7.1]
Gferi_12285  ferredoxin [KO:K00171] [EC:1.2.7.1]
Gferi_25520  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Gferi_13140  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gfe00010  Glycolysis / Gluconeogenesis
gfe00053  Ascorbate and aldarate metabolism
gfe00061  Fatty acid biosynthesis
gfe00071  Fatty acid degradation
gfe00190  Oxidative phosphorylation
gfe00220  Arginine biosynthesis
gfe00250  Alanine, aspartate and glutamate metabolism
gfe00280  Valine, leucine and isoleucine degradation
gfe00350  Tyrosine metabolism
gfe00470  D-Amino acid metabolism
gfe00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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