KEGG   PATHWAY: gqu03430
Entry
gqu03430                    Pathway                                
Name
Mismatch repair - Gibbsiella quercinecans
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
gqu03430  Mismatch repair
gqu03430

Other DBs
GO: 0006298
Organism
Gibbsiella quercinecans [GN:gqu]
Gene
AWC35_08240  DNA mismatch repair protein MutS [KO:K03555]
AWC35_09435  DNA mismatch repair protein MutL [KO:K03572]
AWC35_16575  DNA mismatch repair protein MutH [KO:K03573]
AWC35_10650  uvrD; DNA helicase II [KO:K03657] [EC:5.6.2.4]
AWC35_03620  sbcB; exodeoxyribonuclease I [KO:K01141] [EC:3.1.11.1]
AWC35_17720  xseA; exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
AWC35_06465  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
AWC35_22475  DNA polymerase III subunit epsilon [KO:K10857] [EC:3.1.11.-]
AWC35_16260  single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
AWC35_13710  single-stranded DNA-binding protein [KO:K03111]
AWC35_16865  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
AWC35_11350  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
AWC35_06205  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
AWC35_05740  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
AWC35_01055  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
AWC35_07950  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
AWC35_22490  DNA polymerase III subunit theta [KO:K02345] [EC:2.7.7.7]
AWC35_03615  hypothetical protein [KO:K02345] [EC:2.7.7.7]
AWC35_14105  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
AWC35_09000  DNA polymerase III subunit psi [KO:K02344] [EC:2.7.7.7]
AWC35_18890  ligA; DNA ligase (NAD(+)) LigA [KO:K01972] [EC:6.5.1.2]
AWC35_11725  ligB; aromatic ring-opening dioxygenase LigB [KO:K01972] [EC:6.5.1.2]
AWC35_12850  DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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