KEGG   PATHWAY: hala00020
Entry
hala00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Halorhabdus sp. CBA1104
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hala00020  Citrate cycle (TCA cycle)
hala00020

Module
hala_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hala00020]
hala_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hala00020]
Other DBs
GO: 0006099
Organism
Halorhabdus sp. CBA1104 [GN:hala]
Gene
Hrd1104_12615  citrate synthase [KO:K01647] [EC:2.3.3.1]
Hrd1104_06505  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
Hrd1104_10045  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Hrd1104_06115  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Hrd1104_05205  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Hrd1104_08125  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Hrd1104_08130  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Hrd1104_04075  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
Hrd1104_06065  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
Hrd1104_06070  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Hrd1104_06080  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
Hrd1104_06075  succinate dehydrogenase [KO:K00242]
Hrd1104_08280  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
Hrd1104_07445  pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
Hrd1104_03140  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
Hrd1104_03145  2-ketoglutarate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
Hrd1104_07450  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
Hrd1104_07435  pyruvate ferredoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
Hrd1104_07440  4Fe-4S dicluster domain-containing protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hala00010  Glycolysis / Gluconeogenesis
hala00061  Fatty acid biosynthesis
hala00071  Fatty acid degradation
hala00190  Oxidative phosphorylation
hala00220  Arginine biosynthesis
hala00250  Alanine, aspartate and glutamate metabolism
hala00280  Valine, leucine and isoleucine degradation
hala00350  Tyrosine metabolism
hala00470  D-Amino acid metabolism
hala00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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