KEGG   PATHWAY: hals00020
Entry
hals00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Halocella sp. SP3-1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hals00020  Citrate cycle (TCA cycle)
hals00020

Module
hals_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hals00020]
hals_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hals00020]
hals_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hals00020]
Other DBs
GO: 0006099
Organism
Halocella sp. SP3-1 [GN:hals]
Gene
D7D81_13925  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
D7D81_11735  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
D7D81_09605  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
D7D81_11680  isocitrate/isopropylmalate dehydrogenase family protein [KO:K00030] [EC:1.1.1.41]
D7D81_14985  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
D7D81_14110  vorB; 3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
D7D81_14105  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
D7D81_14100  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
D7D81_14115  4Fe-4S dicluster domain-containing protein [KO:K00176] [EC:1.2.7.3]
D7D81_11860  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
D7D81_11865  Fe-S-containing hydro-lyase [KO:K01678] [EC:4.2.1.2]
D7D81_17260  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
D7D81_15385  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
D7D81_03155  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hals00010  Glycolysis / Gluconeogenesis
hals00053  Ascorbate and aldarate metabolism
hals00061  Fatty acid biosynthesis
hals00071  Fatty acid degradation
hals00190  Oxidative phosphorylation
hals00220  Arginine biosynthesis
hals00250  Alanine, aspartate and glutamate metabolism
hals00280  Valine, leucine and isoleucine degradation
hals00350  Tyrosine metabolism
hals00470  D-Amino acid metabolism
hals00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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