KEGG   PATHWAY: hasv00020
Entry
hasv00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Halorhabdus sp. SVX81
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hasv00020  Citrate cycle (TCA cycle)
hasv00020

Module
hasv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hasv00020]
hasv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hasv00020]
Other DBs
GO: 0006099
Organism
Halorhabdus sp. SVX81 [GN:hasv]
Gene
SVXHr_0106  gltA2; Citrate synthase [KO:K01647] [EC:2.3.3.1]
SVXHr_2023  gltA3; Citrate synthase [KO:K01647] [EC:2.3.3.1]
SVXHr_2703  acnA; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SVXHr_1301  icd; Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SVXHr_2699  lpd2; Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SVXHr_0728  porA2; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SVXHr_0727  porB2; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SVXHr_1135  sucD; Succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
SVXHr_1136  sucC; Succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
SVXHr_1743  sdhA; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SVXHr_1742  sdhB; Succinate dehydrogenase/fumarate reductase, iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SVXHr_1740  sdhC; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit [KO:K00241]
SVXHr_1741  sdhD; Succinate dehydrogenase/fumarate reductase, membrane anchor subunit [KO:K00242]
SVXHr_1920  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
SVXHr_0148  porA; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
SVXHr_1725  porA3; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
SVXHr_0147  porB; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
SVXHr_1726  porB3; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
SVXHr_0150  porG; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
SVXHr_0149  porD; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hasv00010  Glycolysis / Gluconeogenesis
hasv00053  Ascorbate and aldarate metabolism
hasv00061  Fatty acid biosynthesis
hasv00071  Fatty acid degradation
hasv00190  Oxidative phosphorylation
hasv00220  Arginine biosynthesis
hasv00250  Alanine, aspartate and glutamate metabolism
hasv00280  Valine, leucine and isoleucine degradation
hasv00350  Tyrosine metabolism
hasv00470  D-Amino acid metabolism
hasv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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