KEGG   PATHWAY: hcv03030
Entry
hcv03030                    Pathway                                
Name
DNA replication - Heliorestis convoluta
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
hcv03030  DNA replication
hcv03030

Organism
Heliorestis convoluta [GN:hcv]
Gene
FTV88_2572  dnaQ; exonuclease, DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
FTV88_0490  dnaE; DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
FTV88_2116  polC; PolC-type DNA polymerase III [KO:K03763] [EC:2.7.7.7]
FTV88_2553  dnaX; DNA polymerase III, subunit gamma and tau [KO:K02343] [EC:2.7.7.7]
FTV88_2582  holB; DNA polymerase III, delta' subunit [KO:K02341] [EC:2.7.7.7]
FTV88_1818  holA; DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
FTV88_0828  dnaN; DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
FTV88_2870  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
FTV88_0903  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
FTV88_1565  AAA family ATPase [KO:K02314] [EC:5.6.2.3]
FTV88_1691  DNA primase [KO:K02316] [EC:2.7.7.101]
FTV88_0897  single-stranded DNA-binding protein [KO:K03111]
FTV88_0659  single-stranded DNA-binding protein [KO:K03111]
FTV88_2576  Ribonuclease H [KO:K03469] [EC:3.1.26.4]
FTV88_2042  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
FTV88_3009  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
FTV88_2917  ligA; DNA ligase, NAD-dependent [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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