KEGG   PATHWAY: hex00020
Entry
hex00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Helicobacter pylori F57
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hex00020  Citrate cycle (TCA cycle)
hex00020

Module
hex_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hex00020]
hex_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hex00020]
Other DBs
GO: 0006099
Organism
Helicobacter pylori F57 [GN:hex]
Gene
HPF57_1318  gltA; Type II citrate synthase [KO:K01647] [EC:2.3.3.1]
HPF57_0801  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HPF57_1317  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HPF57_0615  oorA; 2-oxoglutarate-acceptor oxidoreductase subunit OorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HPF57_0616  oorB; 2-oxoglutarate-acceptor oxidoreductase subunit OorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HPF57_0617  oorC; 2-oxoglutarate-acceptor oxidoreductase subunit OorC [KO:K00177] [EC:1.2.7.3]
HPF57_0614  oorD; 2-oxoglutarate-acceptor oxidoreductase subunit OorD [KO:K00176] [EC:1.2.7.3]
HPF57_0210  frdA; fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
HPF57_0209  frdB; fumarate reductase iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
HPF57_0211  frdC; fumarate reductase cytochrome b-556 subunit [KO:K25996]
HPF57_1281  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HPF57_0099  hypothetical protein [KO:K00116] [EC:1.1.5.4]
HPF57_1073  porA; pyruvate flavodoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
HPF57_1074  porB; pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
HPF57_1071  porG; pyruvate flavodoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
HPF57_1072  porD; pyruvate flavodoxin oxidoreductase subunit delta [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hex00010  Glycolysis / Gluconeogenesis
hex00061  Fatty acid biosynthesis
hex00071  Fatty acid degradation
hex00190  Oxidative phosphorylation
hex00220  Arginine biosynthesis
hex00250  Alanine, aspartate and glutamate metabolism
hex00280  Valine, leucine and isoleucine degradation
hex00470  D-Amino acid metabolism
hex00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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