KEGG   PATHWAY: hpf00020
Entry
hpf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Helicobacter pylori F30
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hpf00020  Citrate cycle (TCA cycle)
hpf00020

Module
hpf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hpf00020]
hpf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hpf00020]
Other DBs
GO: 0006099
Organism
Helicobacter pylori F30 [GN:hpf]
Gene
HPF30_1271  gltA; Type II citrate synthase [KO:K01647] [EC:2.3.3.1]
HPF30_0551  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HPF30_1270  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HPF30_0737  oorA; 2-oxoglutarate-acceptor oxidoreductase subunit OorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HPF30_0736  oorB; 2-oxoglutarate-acceptor oxidoreductase subunit OorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HPF30_0735  oorC; 2-oxoglutarate-acceptor oxidoreductase subunit OorC [KO:K00177] [EC:1.2.7.3]
HPF30_0738  oorD; 2-oxoglutarate-acceptor oxidoreductase subunit OorD [KO:K00176] [EC:1.2.7.3]
HPF30_1102  frdA; fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
HPF30_1103  frdB; fumarate reductase iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
HPF30_1101  frdC; fumarate reductase cytochrome b-556 subunit [KO:K25996]
HPF30_0075  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HPF30_1214  hypothetical protein [KO:K00116] [EC:1.1.5.4]
HPF30_0278  porA; pyruvate flavodoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
HPF30_0277  porB; pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
HPF30_0280  porG; pyruvate flavodoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
HPF30_0279  porD; pyruvate flavodoxin oxidoreductase subunit delta [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hpf00010  Glycolysis / Gluconeogenesis
hpf00061  Fatty acid biosynthesis
hpf00071  Fatty acid degradation
hpf00190  Oxidative phosphorylation
hpf00220  Arginine biosynthesis
hpf00250  Alanine, aspartate and glutamate metabolism
hpf00280  Valine, leucine and isoleucine degradation
hpf00470  D-Amino acid metabolism
hpf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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