KEGG   PATHWAY: hpu00020
Entry
hpu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Helicobacter pylori Cuz20
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hpu00020  Citrate cycle (TCA cycle)
hpu00020

Module
hpu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hpu00020]
hpu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hpu00020]
Other DBs
GO: 0006099
Organism
Helicobacter pylori Cuz20 [GN:hpu]
Gene
HPCU_00115  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
HPCU_04140  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HPCU_00120  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HPCU_03220  oorA; 2-oxoglutarate-acceptor oxidoreductase subunit OorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HPCU_03225  oorB; 2-oxoglutarate-acceptor oxidoreductase subunit OorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HPCU_03230  oorC; 2-oxoglutarate-acceptor oxidoreductase subunit OorC [KO:K00177] [EC:1.2.7.3]
HPCU_03215  oorD; 2-oxoglutarate-acceptor oxidoreductase subunit OorD [KO:K00176] [EC:1.2.7.3]
HPCU_00930  fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
HPCU_00925  frdB; fumarate reductase iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
HPCU_00935  fumarate reductase cytochrome b-556 subunit [KO:K25996]
HPCU_06770  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HPCU_00395  hypothetical protein [KO:K00116] [EC:1.1.5.4]
HPCU_05625  porA; pyruvate flavodoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
HPCU_05630  pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
HPCU_05615  pyruvate flavodoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
HPCU_05620  porD; pyruvate flavodoxin oxidoreductase subunit delta [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hpu00010  Glycolysis / Gluconeogenesis
hpu00061  Fatty acid biosynthesis
hpu00071  Fatty acid degradation
hpu00190  Oxidative phosphorylation
hpu00220  Arginine biosynthesis
hpu00250  Alanine, aspartate and glutamate metabolism
hpu00280  Valine, leucine and isoleucine degradation
hpu00470  D-Amino acid metabolism
hpu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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