KEGG   PATHWAY: hpyc00020
Entry
hpyc00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Helicobacter pylori oki112
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hpyc00020  Citrate cycle (TCA cycle)
hpyc00020

Module
hpyc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hpyc00020]
hpyc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hpyc00020]
Other DBs
GO: 0006099
Organism
Helicobacter pylori oki112 [GN:hpyc]
Gene
HPOKI112_00160  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
HPOKI112_03135  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HPOKI112_00165  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HPOKI112_04095  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HPOKI112_04090  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HPOKI112_04085  oorC; 2-oxoglutarate:acceptor oxidoreductase [KO:K00177] [EC:1.2.7.3]
HPOKI112_04100  2-oxoglutarate:acceptor oxidoreductase [KO:K00176] [EC:1.2.7.3]
HPOKI112_01250  fumarate reductase [KO:K00233] [EC:1.3.5.1 7.1.1.12]
HPOKI112_01245  frdB; fumarate reductase [KO:K25995] [EC:1.3.5.1 7.1.1.12]
HPOKI112_01255  fumarate reductase [KO:K25996]
HPOKI112_07020  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HPOKI112_00710  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
HPOKI112_05865  porA; 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
HPOKI112_05870  pyruvate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
HPOKI112_05855  porC; pyruvate flavodoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
HPOKI112_05860  porD; ferredoxin [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hpyc00010  Glycolysis / Gluconeogenesis
hpyc00061  Fatty acid biosynthesis
hpyc00071  Fatty acid degradation
hpyc00190  Oxidative phosphorylation
hpyc00220  Arginine biosynthesis
hpyc00250  Alanine, aspartate and glutamate metabolism
hpyc00280  Valine, leucine and isoleucine degradation
hpyc00470  D-Amino acid metabolism
hpyc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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