KEGG   PATHWAY: hpz00020
Entry
hpz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Helicobacter pylori 52
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hpz00020  Citrate cycle (TCA cycle)
hpz00020

Module
hpz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hpz00020]
Other DBs
GO: 0006099
Organism
Helicobacter pylori 52 [GN:hpz]
Gene
HPKB_1297  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
HPKB_1296  isocitrate dehydrogenase (icd) [KO:K00031] [EC:1.1.1.42]
HPKB_0754  oorA; 2-oxoglutarate oxidoreductase OorA subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HPKB_0753  oorB; 2-oxoglutarate oxidoreductase OorB subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HPKB_0752  oorC; 2-oxoglutarate-acceptor oxidoreductase subunit OorC [KO:K00177] [EC:1.2.7.3]
HPKB_0755  oorD; pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K00176] [EC:1.2.7.3]
HPKB_0200  fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
HPKB_0199  sdhB; fumarate reductase iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
HPKB_0201  fumarate reductase cytochrome b-556 subunit [KO:K25996]
HPKB_1258  fumC; fumarase [KO:K01679] [EC:4.2.1.2]
HPKB_0098  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
HPKB_1041  porA; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [KO:K00169] [EC:1.2.7.1]
HPKB_1042  porB; pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
HPKB_1039  pyruvate ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
HPKB_1040  porD; putative glutamate synthase (NADPH) small subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hpz00010  Glycolysis / Gluconeogenesis
hpz00061  Fatty acid biosynthesis
hpz00071  Fatty acid degradation
hpz00190  Oxidative phosphorylation
hpz00220  Arginine biosynthesis
hpz00250  Alanine, aspartate and glutamate metabolism
hpz00280  Valine, leucine and isoleucine degradation
hpz00470  D-Amino acid metabolism
hpz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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