KEGG   PATHWAY: hrm03030
Entry
hrm03030                    Pathway                                
Name
DNA replication - Halobaculum rubrum
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
hrm03030  DNA replication
hrm03030

Organism
Halobaculum rubrum [GN:hrm]
Gene
K6T25_15260  hypothetical protein [KO:K02316] [EC:2.7.7.101]
K6T25_03070  DNA primase [KO:K02316] [EC:2.7.7.101]
K6T25_05635  ribonuclease HI family protein [KO:K03469] [EC:3.1.26.4]
K6T25_08505  rnhB; ribonuclease HII [KO:K03470] [EC:3.1.26.4]
K6T25_06400  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
K6T25_15215  type B DNA-directed DNA polymerase [KO:K02319] [EC:2.7.7.7]
K6T25_01480  type B DNA-directed DNA polymerase [KO:K02319] [EC:2.7.7.7]
K6T25_01675  type B DNA-directed DNA polymerase [KO:K02319] [EC:2.7.7.7]
K6T25_02990  hypothetical protein [KO:K02319] [EC:2.7.7.7]
K6T25_07395  DNA-directed DNA polymerase II small subunit [KO:K02323] [EC:2.7.7.7]
K6T25_06440  polC; DNA polymerase II large subunit [KO:K02322] [EC:2.7.7.7]
K6T25_05910  hypothetical protein [KO:K10726] [EC:5.6.2.3]
K6T25_14685  priS; DNA primase small subunit PriS [KO:K02683] [EC:2.7.7.102]
K6T25_07550  DNA primase [KO:K18882]
K6T25_03650  single-stranded DNA binding protein [KO:K07466]
K6T25_07720  DNA polymerase sliding clamp [KO:K04802]
K6T25_06190  replication factor C small subunit [KO:K04801]
K6T25_07525  AAA family ATPase [KO:K04801]
K6T25_01110  replication factor C large subunit [KO:K04800]
K6T25_14075  AAA family ATPase [KO:K10742] [EC:5.6.2.3 3.1.-.-]
K6T25_14140  fen; flap endonuclease-1 [KO:K04799] [EC:3.1.-.-]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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