KEGG   PATHWAY: hsh00020
Entry
hsh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Helicobacter suis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hsh00020  Citrate cycle (TCA cycle)
hsh00020

Module
hsh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hsh00020]
hsh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hsh00020]
Other DBs
GO: 0006099
Organism
Helicobacter suis [GN:hsh]
Gene
NHP194022_04000  gltA_1; Type II citrate synthase GltA [KO:K01647] [EC:2.3.3.1]
NHP194022_05530  acnB; Aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
NHP194022_04010  icd; Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NHP194022_07160  oorA; 2-oxoglutarate-acceptor oxidoreductase subunit OorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
NHP194022_07170  oorB; 2-oxoglutarate-acceptor oxidoreductase subunit OorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
NHP194022_07180  oorC; 2-oxoglutarate-acceptor oxidoreductase subunit OorC [KO:K00177] [EC:1.2.7.3]
NHP194022_07150  oorD; 2-oxoglutarate-acceptor oxidoreductase subunit OorD [KO:K00176] [EC:1.2.7.3]
NHP194022_14120  frdA; Fumarate reductase flavoprotein subunit FrdA [KO:K00233] [EC:1.3.5.1 7.1.1.12]
NHP194022_14110  frdB; Fumarate reductase iron-sulfur subunit FrdB [KO:K25995] [EC:1.3.5.1 7.1.1.12]
NHP194022_14130  frdC; Fumarate reductase cytochrome b-556 subunit FrdC [KO:K25996]
NHP194022_15940  fumC; Fumarate hydratase FumC [KO:K01679] [EC:4.2.1.2]
NHP194022_11640  mqo; Quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
NHP194022_07630  porA; Pyruvate flavodoxin oxidoreductase subunit alpha PorA [KO:K00169] [EC:1.2.7.1]
NHP194022_07620  porB; Pyruvate ferredoxin oxidoreductase, beta subunit PorB [KO:K00170] [EC:1.2.7.1]
NHP194022_07650  porG; Pyruvate flavodoxin oxidoreductase subunit gamma PorG [KO:K00172] [EC:1.2.7.1]
NHP194022_07640  porD; Pyruvate flavodoxin oxidoreductase subunit delta PorD [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hsh00010  Glycolysis / Gluconeogenesis
hsh00061  Fatty acid biosynthesis
hsh00190  Oxidative phosphorylation
hsh00220  Arginine biosynthesis
hsh00250  Alanine, aspartate and glutamate metabolism
hsh00280  Valine, leucine and isoleucine degradation
hsh00350  Tyrosine metabolism
hsh00470  D-Amino acid metabolism
hsh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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