KEGG   PATHWAY: hsi03030
Entry
hsi03030                    Pathway                                
Name
DNA replication - Halomonas aestuarii
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
hsi03030  DNA replication
hsi03030

Organism
Halomonas aestuarii [GN:hsi]
Gene
BOX17_00385  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
BOX17_11565  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
BOX17_15200  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
BOX17_11105  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
BOX17_10015  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
BOX17_13320  hypothetical protein [KO:K02343] [EC:2.7.7.7]
BOX17_01515  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
BOX17_14015  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
BOX17_05565  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
BOX17_07950  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
BOX17_11275  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
BOX17_11470  DNA primase [KO:K02316] [EC:2.7.7.101]
BOX17_09130  single-stranded DNA-binding protein [KO:K03111]
BOX17_15195  ribonuclease HI [KO:K03469] [EC:3.1.26.4]
BOX17_07500  hypothetical protein [KO:K03469] [EC:3.1.26.4]
BOX17_10010  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
BOX17_06170  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
BOX17_10375  ligA; DNA ligase (NAD(+)) LigA [KO:K01972] [EC:6.5.1.2]
BOX17_06420  DNA ligase B [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

DBGET integrated database retrieval system