KEGG   PATHWAY: hti00020
Entry
hti00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Halorhabdus tiamatea
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hti00020  Citrate cycle (TCA cycle)
hti00020

Module
hti_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hti00020]
Other DBs
GO: 0006099
Organism
Halorhabdus tiamatea [GN:hti]
Gene
HTIA_1519  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
HTIA_2305  citrate (Si) synthase [KO:K01647] [EC:2.3.3.1]
HTIA_0464  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
HTIA_0756  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HTIA_0757  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HTIA_0302  succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
HTIA_0303  succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
HTIA_2738  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HTIA_2739  succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
HTIA_2741  succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
HTIA_2740  succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
HTIA_2400  fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
HTIA_2753  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
HTIA_1557  porA; pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
HTIA_1556  porB; pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
HTIA_2752  2-oxoglutarate oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
HTIA_1559  porC; pyruvate:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
HTIA_1558  porD; pyruvate:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hti00010  Glycolysis / Gluconeogenesis
hti00053  Ascorbate and aldarate metabolism
hti00061  Fatty acid biosynthesis
hti00071  Fatty acid degradation
hti00190  Oxidative phosphorylation
hti00220  Arginine biosynthesis
hti00250  Alanine, aspartate and glutamate metabolism
hti00280  Valine, leucine and isoleucine degradation
hti00350  Tyrosine metabolism
hti00470  D-Amino acid metabolism
hti00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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