KEGG   PATHWAY: hut00020
Entry
hut00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Halorhabdus utahensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hut00020  Citrate cycle (TCA cycle)
hut00020

Module
hut_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hut00020]
hut_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hut00020]
Other DBs
GO: 0006099
Organism
Halorhabdus utahensis [GN:hut]
Gene
Huta_2539  Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
Huta_1523  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
Huta_1803  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Huta_0281  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Huta_1805  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Huta_0897  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Huta_0898  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Huta_0439  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Huta_0438  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Huta_2832  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Huta_2833  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Huta_2835  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
Huta_2834  succinate dehydrogenase, subunit D (membrane anchor protein) [KO:K00242]
Huta_2660  fumarate lyase [KO:K01679] [EC:4.2.1.2]
Huta_2848  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Huta_1481  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Huta_1482  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00170] [EC:1.2.7.1]
Huta_2847  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
Huta_1479  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Huta_1480  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hut00010  Glycolysis / Gluconeogenesis
hut00053  Ascorbate and aldarate metabolism
hut00061  Fatty acid biosynthesis
hut00071  Fatty acid degradation
hut00190  Oxidative phosphorylation
hut00220  Arginine biosynthesis
hut00250  Alanine, aspartate and glutamate metabolism
hut00280  Valine, leucine and isoleucine degradation
hut00350  Tyrosine metabolism
hut00470  D-Amino acid metabolism
hut00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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