KEGG   PATHWAY: hut03030
Entry
hut03030                    Pathway                                
Name
DNA replication - Halorhabdus utahensis
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
hut03030  DNA replication
hut03030

Organism
Halorhabdus utahensis [GN:hut]
Gene
Huta_0194  TOPRIM domain protein [KO:K02316] [EC:2.7.7.101]
Huta_1207  ribonuclease H [KO:K03469] [EC:3.1.26.4]
Huta_0985  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
Huta_2628  DNA ligase, NAD-dependent [KO:K01972] [EC:6.5.1.2]
Huta_1891  DNA polymerase B region [KO:K02319] [EC:2.7.7.7]
Huta_0375  DNA polymerase B region [KO:K02319] [EC:2.7.7.7]
Huta_1610  DNA-directed DNA polymerase [KO:K02323] [EC:2.7.7.7]
Huta_1619  DNA polymerase II, large subunit DP2 [KO:K02322] [EC:2.7.7.7]
Huta_2167  transcriptional regulator, XRE family [KO:K10726] [EC:5.6.2.3]
Huta_2753  DNA primase, small subunit [KO:K02683] [EC:2.7.7.102]
Huta_1650  DNA primase, large subunit [KO:K18882]
Huta_2247  nucleic acid binding OB-fold tRNA/helicase-type [KO:K07466]
Huta_1648  Proliferating cell nuclear antigen, PCNA [KO:K04802]
Huta_1957  Replication factor C [KO:K04801]
Huta_1927  Replication factor C [KO:K04801]
Huta_3011  AAA ATPase central domain protein [KO:K04800]
Huta_0455  DNA replication factor Dna2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
Huta_2512  XPG I domain protein [KO:K04799] [EC:3.1.-.-]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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