KEGG   PATHWAY: iam03030
Entry
iam03030                    Pathway                                
Name
DNA replication - Iamia sp. SCSIO 61187
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
iam03030  DNA replication
iam03030

Organism
Iamia sp. SCSIO 61187 [GN:iam]
Gene
HC251_15745  DEDD exonuclease domain-containing protein [KO:K02342] [EC:2.7.7.7]
HC251_10505  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
HC251_23005  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
HC251_20945  hypothetical protein [KO:K02341] [EC:2.7.7.7]
HC251_15635  hypothetical protein [KO:K02340] [EC:2.7.7.7]
HC251_00010  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
HC251_22460  hypothetical protein [KO:K02314] [EC:5.6.2.3]
HC251_24460  dnaB; replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
HC251_18985  toprim domain-containing protein [KO:K02316] [EC:2.7.7.101]
HC251_19420  toprim domain-containing protein [KO:K02316] [EC:2.7.7.101]
HC251_24930  toprim domain-containing protein [KO:K02316] [EC:2.7.7.101]
HC251_04220  toprim domain-containing protein [KO:K02316] [EC:2.7.7.101]
HC251_04640  toprim domain-containing protein [KO:K02316] [EC:2.7.7.101]
HC251_10095  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
HC251_24475  ssb; single-stranded DNA-binding protein [KO:K03111]
HC251_12430  single-stranded DNA-binding protein [KO:K03111]
HC251_05960  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
HC251_13445  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
HC251_20420  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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