KEGG   PATHWAY: kng03030
Entry
kng03030                    Pathway                                
Name
DNA replication - Huiozyma naganishii
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
kng03030  DNA replication
kng03030

Organism
Huiozyma naganishii [GN:kng]
Gene
KNAG_0G03060  KNAG0G03060; hypothetical protein [KO:K03469] [EC:3.1.26.4]
KNAG_0B05560  KNAG0B05560; hypothetical protein [KO:K07466]
KNAG_0J02460  KNAG0J02460; hypothetical protein [KO:K04802]
KNAG_0E00650  KNAG0E00650; hypothetical protein [KO:K10742] [EC:5.6.2.3 3.1.-.-]
KNAG_0E02520  KNAG0E02520; hypothetical protein [KO:K04799] [EC:3.1.-.-]
KNAG_0C03740  KNAG0C03740; hypothetical protein [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
KNAG_0I01980  KNAG0I01980; hypothetical protein [KO:K02320] [EC:2.7.7.7]
KNAG_0H00880  KNAG0H00880; hypothetical protein [KO:K02321]
KNAG_0E03610  KNAG0E03610; hypothetical protein [KO:K02684] [EC:2.7.7.102]
KNAG_0A07170  KNAG0A07170; hypothetical protein [KO:K02685]
KNAG_0A05660  KNAG0A05660; hypothetical protein [KO:K02327] [EC:2.7.7.7]
KNAG_0B05030  KNAG0B05030; hypothetical protein [KO:K02328]
KNAG_0I00360  KNAG0I00360; hypothetical protein [KO:K03504]
KNAG_0F00540  KNAG0F00540; hypothetical protein [KO:K02324] [EC:2.7.7.7]
KNAG_0F03890  KNAG0F03890; hypothetical protein [KO:K02325] [EC:2.7.7.7]
KNAG_0H03150  KNAG0H03150; hypothetical protein [KO:K02326] [EC:2.7.7.7]
KNAG_0C01710  KNAG0C01710; hypothetical protein [KO:K03506] [EC:2.7.7.7]
KNAG_0G01500  KNAG0G01500; hypothetical protein [KO:K02540] [EC:5.6.2.3]
KNAG_0G00530  KNAG0G00530; hypothetical protein [KO:K02541] [EC:5.6.2.3]
KNAG_0G01160  KNAG0G01160; hypothetical protein [KO:K02212] [EC:5.6.2.3]
KNAG_0F03000  KNAG0F03000; hypothetical protein [KO:K02209] [EC:5.6.2.3]
KNAG_0B00670  KNAG0B00670; hypothetical protein [KO:K02542] [EC:5.6.2.3]
KNAG_0A03750  KNAG0A03750; hypothetical protein [KO:K02210] [EC:5.6.2.3]
KNAG_0A01300  KNAG0A01300; hypothetical protein [KO:K10739]
KNAG_0A03150  KNAG0A03150; hypothetical protein [KO:K10754]
KNAG_0G00260  KNAG0G00260; hypothetical protein [KO:K10755]
KNAG_0K00740  KNAG0K00740; hypothetical protein [KO:K10755]
KNAG_0H00850  KNAG0H00850; hypothetical protein [KO:K10756]
KNAG_0K02300  KNAG0K02300; hypothetical protein [KO:K10756]
KNAG_0M01960  KNAG0M01960; hypothetical protein [KO:K10743] [EC:3.1.26.4]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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