KEGG   PATHWAY: lang03008
Entry
lang03008                   Pathway                                
Name
Ribosome biogenesis in eukaryotes - Lupinus angustifolius (narrow-leaved blue lupine)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
lang03008  Ribosome biogenesis in eukaryotes
lang03008

Organism
Lupinus angustifolius (narrow-leaved blue lupine) [GN:lang]
Gene
109333147  putative casein kinase II subunit beta-4 [KO:K03115]
109333148  casein kinase II subunit beta-2-like [KO:K03115]
109349609  casein kinase II subunit beta-2-like [KO:K03115]
109331224  casein kinase II subunit beta-1-like [KO:K03115]
109331226  casein kinase II subunit beta-3-like [KO:K03115]
109331735  casein kinase II subunit beta-2-like [KO:K03115]
109332975  casein kinase II subunit beta-2-like [KO:K03115]
109348875  casein kinase II subunit beta-1-like [KO:K03115]
109348797  casein kinase II subunit alpha-2-like [KO:K03097] [EC:2.7.11.1]
109333255  casein kinase II subunit alpha-2-like [KO:K03097] [EC:2.7.11.1]
109333259  casein kinase II subunit alpha-like [KO:K03097] [EC:2.7.11.1]
109331320  casein kinase II subunit alpha-2 [KO:K03097] [EC:2.7.11.1]
109331881  casein kinase II subunit alpha-like [KO:K03097] [EC:2.7.11.1]
109341285  casein kinase II subunit alpha-like [KO:K03097] [EC:2.7.11.1]
109333411  casein kinase II subunit alpha-2-like [KO:K03097] [EC:2.7.11.1]
109332804  nucleolar protein 6 [KO:K14544]
109329822  ribosomal RNA-processing protein 7 homolog A [KO:K14545]
109357028  WD repeat-containing protein 43 [KO:K14546]
109347785  WD repeat-containing protein 43-like [KO:K14546]
109337473  WD repeat-containing protein 43-like [KO:K14546]
109338980  U3 small nucleolar RNA-associated protein 4-like [KO:K14548]
109343224  U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
109336495  protein SLOW WALKER 1 [KO:K14549]
109342034  uncharacterized protein At3g06530 [KO:K14550]
109362354  WD repeat-containing protein 75-like [KO:K14552]
109347092  WD repeat-containing protein 75-like [KO:K14552]
109351891  U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
109355127  U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
109351068  WD repeat-containing protein 36 [KO:K14554]
109362592  transducin beta-like protein 3 [KO:K14555]
109357452  transducin beta-like protein 3 [KO:K14555]
109356515  WD repeat-containing protein 3-like [KO:K14556]
109333703  WD repeat-containing protein 3-like [KO:K14556]
109362608  U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
109326768  periodic tryptophan protein 2 homolog [KO:K14558]
109362585  U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
109332115  U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
109333561  U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
109351730  mediator of RNA polymerase II transcription subunit 36a-like [KO:K14563] [EC:2.1.1.-]
109362990  mediator of RNA polymerase II transcription subunit 36a-like [KO:K14563] [EC:2.1.1.-]
109361974  nucleolar protein 56-like [KO:K14564]
109362337  nucleolar protein 56-like [KO:K14564]
109357943  nucleolar protein 56-like [KO:K14564]
109325637  probable nucleolar protein 5-1 [KO:K14565]
109351489  probable nucleolar protein 5-2 [KO:K14565]
109355473  probable nucleolar protein 5-1 [KO:K14565]
109337302  NHP2-like protein 1 [KO:K12845]
109351395  NHP2-like protein 1 [KO:K12845]
109345666  H/ACA ribonucleoprotein complex subunit 4-like [KO:K11131] [EC:5.4.99.-]
109334424  H/ACA ribonucleoprotein complex subunit 4-like [KO:K11131] [EC:5.4.99.-]
109344795  H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
109354050  H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
109358705  putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [KO:K11128]
109341062  putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [KO:K11128]
109337186  putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [KO:K11128]
109361500  H/ACA ribonucleoprotein complex subunit 3-like protein [KO:K11130]
109340395  rRNA-processing protein FCF1 homolog [KO:K14566]
109329603  uncharacterized protein C57A7.06-like [KO:K14567]
109329609  U3 small nucleolar RNA-associated protein 14 homolog A-like [KO:K14567]
109341912  ribosomal RNA small subunit methyltransferase NEP1-like [KO:K14568] [EC:2.1.1.260]
109337047  ribosomal RNA small subunit methyltransferase NEP1-like [KO:K14568] [EC:2.1.1.260]
109338763  ribosomal RNA small subunit methyltransferase NEP1-like [KO:K14568] [EC:2.1.1.260]
109353419  ribosome biogenesis protein BMS1 homolog [KO:K14569]
109325414  ribosome biogenesis protein BMS1 homolog [KO:K14569]
109359108  RNA cytidine acetyltransferase 1 [KO:K14521] [EC:2.3.1.-]
109338639  probable RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
109336588  uncharacterized LOC109336588 [KO:K01164] [EC:3.1.26.5]
109325273  uncharacterized LOC109325273 [KO:K03538] [EC:3.1.26.5]
109342002  probable ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
109360586  probable ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
109346400  probable ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
109351055  uncharacterized LOC109351055 [KO:K03539] [EC:3.1.26.5]
109350118  small RNA degrading nuclease 1 [KO:K14570] [EC:3.1.-.-]
109331231  small RNA degrading nuclease 1-like [KO:K14570] [EC:3.1.-.-]
109333427  small RNA degrading nuclease 1-like [KO:K14570] [EC:3.1.-.-]
109347501  small RNA degrading nuclease 5 [KO:K14570] [EC:3.1.-.-]
109341144  oligoribonuclease [KO:K13288] [EC:3.1.-.-]
109343142  5'-3' exoribonuclease 3-like [KO:K12619] [EC:3.1.13.-]
109352491  nucleolar GTP-binding protein 1 [KO:K06943]
109355415  nucleolar GTP-binding protein 1-like [KO:K06943]
109351568  nucleolar GTP-binding protein 1-like [KO:K06943]
109356961  nuclear/nucleolar GTPase 2-like [KO:K14537]
109346495  guanine nucleotide-binding protein-like NSN1 [KO:K14538]
109342055  guanine nucleotide-binding protein-like NSN1 [KO:K14538]
109334644  cell division control protein 48 homolog C [KO:K14571]
109334220  midasin [KO:K14572]
109355005  RNA-binding protein 28-like [KO:K14573]
109352188  RNA-binding protein 28-like [KO:K14573]
109349984  RNA-binding protein NOB1 [KO:K11883]
109327969  GTP-binding nuclear protein Ran-3-like [KO:K07936]
109343721  GTP-binding nuclear protein Ran-3-like [KO:K07936]
109343722  GTP-binding nuclear protein Ran-3-like [KO:K07936]
109327967  GTP-binding nuclear protein Ran-3 [KO:K07936]
109326594  GTP-binding nuclear protein Ran1B [KO:K07936]
109348569  protein EXPORTIN 1A-like [KO:K14290]
109332842  protein EXPORTIN 1A [KO:K14290]
109324992  protein EXPORTIN 1A-like [KO:K14290]
109331130  protein EXPORTIN 1A-like [KO:K14290]
109360446  60S ribosomal export protein NMD3 [KO:K07562]
109335072  eukaryotic translation initiation factor 6-2 [KO:K03264]
109352099  eukaryotic translation initiation factor 6-2-like [KO:K03264]
109353506  eukaryotic translation initiation factor 6-2 [KO:K03264]
109355146  ribosome maturation protein SBDS-like [KO:K14574]
109355177  ribosome maturation protein SBDS-like [KO:K14574]
109336612  ribosome maturation protein SBDS-like [KO:K14574]
109326931  elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
109351752  GTPase LSG1-2-like [KO:K14539] [EC:3.6.1.-]
109355243  GTPase LSG1-1-like [KO:K14539] [EC:3.6.1.-]
109359222  adenylate kinase isoenzyme 6 homolog [KO:K18532] [EC:2.7.4.3]
109336621  adenylate kinase isoenzyme 6 homolog [KO:K18532] [EC:2.7.4.3]
109325937  serine/threonine-protein kinase RIO1-like [KO:K07178] [EC:2.7.11.1]
109328727  serine/threonine-protein kinase rio2 [KO:K07179] [EC:2.7.11.1]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
lang03010  Ribosome
KO pathway
ko03008   
LinkDB

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