KEGG   PATHWAY: lee03430
Entry
lee03430                    Pathway                                
Name
Mismatch repair - Leclercia sp. W17
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
lee03430  Mismatch repair
lee03430

Other DBs
GO: 0006298
Organism
Leclercia sp. W17 [GN:lee]
Gene
DVA44_04910  mutS; DNA mismatch repair protein MutS [KO:K03555]
DVA44_21725  DNA mismatch repair endonuclease MutL [KO:K03572]
DVA44_04525  DNA mismatch repair endonuclease MutH [KO:K03573]
DVA44_22705  DNA helicase II [KO:K03657] [EC:5.6.2.4]
DVA44_25440  DNA helicase UvrD [KO:K03657] [EC:5.6.2.4]
DVA44_08070  exodeoxyribonuclease I [KO:K01141] [EC:3.1.11.1]
DVA44_06170  exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
DVA44_18700  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
DVA44_09265  exodeoxyribonuclease X [KO:K10857] [EC:3.1.11.-]
DVA44_04255  single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
DVA44_19370  single-stranded DNA-binding protein [KO:K03111]
DVA44_22285  single-stranded DNA-binding protein SSB1 [KO:K03111]
DVA44_19715  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
DVA44_00010  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
DVA44_18415  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
DVA44_17510  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
DVA44_14965  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
DVA44_19555  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
DVA44_09275  DNA polymerase III subunit theta [KO:K02345] [EC:2.7.7.7]
DVA44_02595  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
DVA44_20705  DNA polymerase III subunit psi [KO:K02344] [EC:2.7.7.7]
DVA44_06480  NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
DVA44_00415  NAD-dependent DNA ligase LigB [KO:K01972] [EC:6.5.1.2]
DVA44_24235  Dam family site-specific DNA-(adenine-N6)-methyltransferase [KO:K06223] [EC:2.1.1.72]
DVA44_01785  adenine-specific DNA-methyltransferase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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