KEGG   PATHWAY: maeo00020
Entry
maeo00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Marinitoga aeolica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
maeo00020  Citrate cycle (TCA cycle)
maeo00020

Module
maeo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:maeo00020]
maeo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:maeo00020]
Other DBs
GO: 0006099
Organism
Marinitoga aeolica [GN:maeo]
Gene
JRV97_00165  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
JRV97_00135  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
JRV97_00050  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JRV97_08045  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JRV97_10290  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
JRV97_06440  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
JRV97_10285  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
JRV97_05920  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
JRV97_10280  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
JRV97_05925  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
JRV97_10295  4Fe-4S dicluster domain-containing protein [KO:K00176] [EC:1.2.7.3]
JRV97_06435  4Fe-4S binding protein [KO:K00176] [EC:1.2.7.3]
JRV97_04245  CoA-binding protein [KO:K01902] [EC:6.2.1.5]
JRV97_04250  succinyl-CoA synthetase [KO:K01903] [EC:6.2.1.5]
JRV97_06650  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
JRV97_00035  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
JRV97_00040  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
JRV97_00045  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
JRV97_02920  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
JRV97_02915  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
JRV97_02930  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
JRV97_02925  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
maeo00010  Glycolysis / Gluconeogenesis
maeo00053  Ascorbate and aldarate metabolism
maeo00061  Fatty acid biosynthesis
maeo00071  Fatty acid degradation
maeo00190  Oxidative phosphorylation
maeo00220  Arginine biosynthesis
maeo00250  Alanine, aspartate and glutamate metabolism
maeo00280  Valine, leucine and isoleucine degradation
maeo00350  Tyrosine metabolism
maeo00470  D-Amino acid metabolism
maeo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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