KEGG   PATHWAY: marq03018
Entry
marq03018                   Pathway                                
Name
RNA degradation - Marinagarivorans cellulosilyticus
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
marq03018  RNA degradation
marq03018

Other DBs
GO: 0006401
Organism
Marinagarivorans cellulosilyticus [GN:marq]
Gene
MARGE09_P3925  putative (di)nucleoside polyphosphate hydrolase [KO:K08311] [EC:3.6.1.-]
MARGE09_P1835  ribonuclease E [KO:K08300] [EC:3.1.26.12]
MARGE09_P3659  ATP-dependent RNA helicase RhlB [KO:K03732] [EC:5.6.2.7]
MARGE09_P3030  enolase [KO:K01689] [EC:4.2.1.11]
MARGE09_P1627  polyribonucleotide nucleotidyltransferase [KO:K00962] [EC:2.7.7.8]
MARGE09_P2573  hypothetical protein [KO:K11927] [EC:5.6.2.7]
MARGE09_P3822  ATP-dependent RNA helicase RhlE [KO:K11927] [EC:5.6.2.7]
MARGE09_P2389  ribonuclease R [KO:K12573] [EC:3.1.13.1]
MARGE09_P0434  ribonuclease R [KO:K12573] [EC:3.1.13.1]
MARGE09_P2574  ATP-dependent RNA helicase DeaD [KO:K05592] [EC:5.6.2.7]
MARGE09_P0843  ATP-dependent DNA helicase RecQ [KO:K03654] [EC:5.6.2.4]
MARGE09_P1304  ATP-dependent DNA helicase RecQ [KO:K03654] [EC:5.6.2.4]
MARGE09_P2670  transcription termination factor Rho [KO:K03628]
MARGE09_P3003  molecular chaperone DnaK [KO:K04043]
MARGE09_P3511  chaperonin GroEL [KO:K04077] [EC:5.6.1.7]
MARGE09_P0835  host factor-I protein [KO:K03666]
MARGE09_P2672  polyphosphate kinase [KO:K00937] [EC:2.7.4.1]
MARGE09_P0660  polyphosphate kinase [KO:K22468] [EC:2.7.4.34]
MARGE09_P1096  poly(A) polymerase [KO:K00970] [EC:2.7.7.19]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
KO pathway
ko03018   
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