KEGG   PATHWAY: meg00020
Entry
meg00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Megasphaera stantonii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
meg00020  Citrate cycle (TCA cycle)
meg00020

Module
meg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:meg00020]
meg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:meg00020]
Other DBs
GO: 0006099
Organism
Megasphaera stantonii [GN:meg]
Gene
DKB62_06590  citrate synthase [KO:K01647] [EC:2.3.3.1]
DKB62_06585  hydratase [KO:K01681] [EC:4.2.1.3]
DKB62_06595  NAD-dependent isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
DKB62_07945  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DKB62_07950  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DKB62_07955  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
DKB62_07940  4Fe-4S dicluster domain-containing protein [KO:K00176] [EC:1.2.7.3]
DKB62_01630  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
DKB62_04835  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
DKB62_02735  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
DKB62_10565  pyruvate ferredoxin oxidoreductase [KO:K00172] [EC:1.2.7.1]
DKB62_10570  4Fe-4S dicluster domain-containing protein [KO:K00171] [EC:1.2.7.1]
DKB62_02645  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
DKB62_03505  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
DKB62_02820  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
DKB62_04025  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
meg00010  Glycolysis / Gluconeogenesis
meg00053  Ascorbate and aldarate metabolism
meg00061  Fatty acid biosynthesis
meg00071  Fatty acid degradation
meg00190  Oxidative phosphorylation
meg00220  Arginine biosynthesis
meg00250  Alanine, aspartate and glutamate metabolism
meg00280  Valine, leucine and isoleucine degradation
meg00350  Tyrosine metabolism
meg00470  D-Amino acid metabolism
meg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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