KEGG   PATHWAY: mela03030
Entry
mela03030                   Pathway                                
Name
DNA replication - Melaminivora suipulveris
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
mela03030  DNA replication
mela03030

Organism
Melaminivora suipulveris [GN:mela]
Gene
C6568_17320  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
C6568_00230  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
C6568_15860  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
C6568_00055  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
C6568_10430  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
C6568_00350  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
C6568_09360  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
C6568_02855  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
C6568_14610  DNA primase [KO:K02316] [EC:2.7.7.101]
C6568_10305  single-stranded DNA-binding protein [KO:K03111]
C6568_16995  single-stranded DNA-binding protein [KO:K03111]
C6568_01420  ribonuclease HI [KO:K03469] [EC:3.1.26.4]
C6568_17670  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
C6568_14055  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
C6568_00790  ligA; DNA ligase [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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