KEGG   PATHWAY: mmea03008
Entry
mmea03008                   Pathway                                
Name
Ribosome biogenesis in eukaryotes - Malurus melanocephalus (red-backed fairy wren)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
mmea03008  Ribosome biogenesis in eukaryotes
mmea03008

Organism
Malurus melanocephalus (red-backed fairy wren) [GN:mmea]
Gene
130588028  CSNK2B; casein kinase II subunit beta [KO:K03115]
130573549  CSNK2A1; casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
130579491  CSNK2A2; casein kinase II subunit alpha' [KO:K03097] [EC:2.7.11.1]
130573267  NOL6; nucleolar protein 6 [KO:K14544]
130585897  RRP7A; ribosomal RNA-processing protein 7 homolog A [KO:K14545]
130584161  WDR43; WD repeat-containing protein 43 [KO:K14546]
130584306  UTP4; U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
130572241  UTP15; U3 small nucleolar RNA-associated protein 15 homolog isoform X1 [KO:K14549]
130588794  HEATR1; HEAT repeat-containing protein 1 [KO:K14550]
130583547  WDR75; WD repeat-containing protein 75 [KO:K14552]
130581339  UTP18; U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
130574338  WDR36; WD repeat-containing protein 36 [KO:K14554]
130576513  TBL3; transducin beta-like protein 3 isoform X1 [KO:K14555]
130584427  WDR3; WD repeat-containing protein 3 isoform X1 [KO:K14556]
130575138  UTP6; U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
130581034  PWP2; periodic tryptophan protein 2 homolog [KO:K14558]
130583259  MPHOSPH10; U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
130578974  IMP3; U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
130586454  IMP4; U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
130579340  TCOF1; treacle protein [KO:K14562]
130587080  rRNA 2'-O-methyltransferase fibrillarin-like [KO:K14563] [EC:2.1.1.-]
130575459  NOP56; nucleolar protein 56 [KO:K14564]
130579143  NOP58; nucleolar protein 58 [KO:K14565]
130588258  SNU13; NHP2-like protein 1 [KO:K12845]
130577316  DKC1; H/ACA ribonucleoprotein complex subunit DKC1 isoform X1 [KO:K11131] [EC:5.4.99.-]
130580779  NHP2; H/ACA ribonucleoprotein complex subunit 2 [KO:K11129]
130576231  GAR1; H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
130587770  NOP10; H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
130577502  FCF1; rRNA-processing protein FCF1 homolog [KO:K14566]
130578721  UTP14A; U3 small nucleolar RNA-associated protein 14 homolog A [KO:K14567]
130576819  DROSHA; ribonuclease 3 [KO:K03685] [EC:3.1.26.3]
130574794  EMG1; ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
130573058  BMS1; ribosome biogenesis protein BMS1 homolog [KO:K14569]
130577539  NAT10; RNA cytidine acetyltransferase [KO:K14521] [EC:2.3.1.-]
130581796  RCL1; RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
130573674  POP1; ribonucleases P/MRP protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
130583681  RPP38; ribonuclease P protein subunit p38 [KO:K14523] [EC:3.1.26.5]
130577663  POP4; LOW QUALITY PROTEIN: ribonuclease P protein subunit p29 isoform X1 [KO:K03538] [EC:3.1.26.5]
130578011  POP5; ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
130575016  RPP25; ribonuclease P protein subunit p25 [KO:K14525] [EC:3.1.26.5]
130575619  RPP25L; ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
130576353  RPP30; ribonuclease P protein subunit p30 isoform X1 [KO:K03539] [EC:3.1.26.5]
130575325  RPP40; ribonuclease P protein subunit p40 [KO:K14530] [EC:3.1.26.5]
130572128  uncharacterized protein LOC130572128 [KO:K14530] [EC:3.1.26.5]
130584705  LOW QUALITY PROTEIN: probable RNA-directed DNA polymerase from transposon BS [KO:K14530] [EC:3.1.26.5]
130585980  REXO1; LOW QUALITY PROTEIN: RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
130582210  REXO5; RNA exonuclease 5 [KO:K14570] [EC:3.1.-.-]
130581107  REXO2; oligoribonuclease, mitochondrial [KO:K13288] [EC:3.1.-.-]
130574008  XRN1; 5'-3' exoribonuclease 1 isoform X1 [KO:K12618] [EC:3.1.13.-]
130582819  XRN2; 5'-3' exoribonuclease 2 [KO:K12619] [EC:3.1.13.-]
130583103  GTPBP4; GTP-binding protein 4 [KO:K06943]
130582371  GNL2; nucleolar GTP-binding protein 2 [KO:K14537]
130586732  GNL3L; guanine nucleotide-binding protein-like 3-like protein [KO:K14538]
130578605  GNL3; guanine nucleotide-binding protein-like 3 [KO:K14538]
130583038  NVL; nuclear valosin-containing protein-like [KO:K14571]
130581366  MDN1; midasin [KO:K14572]
130584784  NOB1; RNA-binding protein NOB1 [KO:K11883]
130585790  RAN; GTP-binding nuclear protein Ran [KO:K07936]
130583322  XPO1; exportin-1 [KO:K14290]
130586149  NMD3; 60S ribosomal export protein NMD3 [KO:K07562]
130578941  NXT2; NTF2-related export protein 2 [KO:K14285]
130585024  EIF6; eukaryotic translation initiation factor 6 [KO:K03264]
130586625  SBDS; ribosome maturation protein SBDS [KO:K14574]
130585915  EFL1; elongation factor-like GTPase 1 isoform X1 [KO:K14536] [EC:3.6.5.-]
130583318  LSG1; large subunit GTPase 1 homolog isoform X1 [KO:K14539] [EC:3.6.1.-]
130579958  AFG2A; ribosome biogenesis protein SPATA5 [KO:K14575]
130585191  AK6; adenylate kinase isoenzyme 6 [KO:K18532] [EC:2.7.4.3]
130575312  RIOK1; serine/threonine-protein kinase RIO1 [KO:K07178] [EC:2.7.11.1]
130580625  serine/threonine-protein kinase RIO2-like [KO:K07179] [EC:2.7.11.1]
130584604  serine/threonine-protein kinase RIO2-like [KO:K07179] [EC:2.7.11.1]
130588037  18S ribosomal RNA [KO:K01979]
130588038  28S ribosomal RNA [KO:K01982]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
mmea03010  Ribosome
KO pathway
ko03008   
LinkDB

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